JPsnpHou00247, JPsnpHou00247 (genetic_marker) Pyrus pyrifolia

Marker Overview


Name	JPsnpHou00247
dbSNP ID	N/A
Type	SNP
SNP Alleles	A/G
5' Flanking Sequence	CTCCAACAAACCAATCAAACCCTAGCAATGGCAAATCCTAAGGTTTTCTTTGACATGACG ATCGGAGGCCAGCCGGCCGGCCGCATCGTGATGGAGCTCTTCGCCGACACCACCCCCCGC ACCGCTGAGAACTTCAGGGCTCTCTGCACCGGCGAGAAGGGCGTCGGCCGCTCCGGCAAG CCCCTCCACTACAAGGGATCCGCCTTCCACCGCGTGATCCCGGGTTTCATGTGCCAGGGA GGTGATTTCACCGCCGGAAACGGCACCGGAGGCGAGTCGATCTACGGCGCCAAGTTCGCG GACGAGAACTTCAACAAGAAGCACACCGGACCCGGAATCTTGTCCATGGCCAACGCCGGT CCCGGAACTAATGGATCTCAGTTCTTCATCTGCACCGCCAAGACCGAGTGGCTCGACGGC AAGCACGTGGTGTTCGGGCAGGTGGTCGAGGGGCTCGATGTGGTGAAGAACATCGA
3' Flanking Sequence	AAGGTGGGGTCTGGACAGGGAAGGACCTCGAAGCCGGTGGTGnTCGCCGACTGTGGCCAG CTCTCCTAGACGATGnCGTTTCGACTGCTCATCTGTGGATGATGGAAACGTCGTCGTTCT ATGTCTTTGTTATTATGAGTCTTTAAATTTGGGTACTAATTAGGTGGCGTCATATTAGGG TTTGGGTTATGGACCTTATTATGGTTTAATTCTCTGATTTTCCGTCTAATGCTCTTCCGG TGGTTTCTCATCTGAGACTCTTTATTCTCTGTCGAACTGAGCTATTATCnTTAAATAAAT TAGGCTTTTTTTCCCACTAAAAAAAAAAAAAAACAA
Species	Pyrus pyrifolia
Publication	[view all]
Contact	Toshiya Yamamoto
Comment	SNP position in sequence: 477

Contact

Name

Details

Toshiya Yamamoto

First name:	Toshiya
Last name:	Yamamoto
Institution:	National Institute of Fruit Tree Science, Graduate School of Life and Environmental Sciences, University of Tsukuba
Address:	National Institute of Fruit Tree Science, 2-1 Fujimoto, Tsukuba, Ibaraki 305-8605, Japan
Country:	Japan
Email:	toshiya@affrc.go.jp
Last update:	Apr 2014

Publications


Year	Publication
2014	Terakami S, Nishitani C, Kunihisa M, Shirasawa K, Sato S, Tabata S, Kurita K, Kanamori H, Katayose Y, Takada N, Saito T, Yamamoto T. Transcriptome-based single nucleotide polymorphism markers for genome mapping in Japanese pear (Pyrus pyrifolia Nakai). Tree genetics & genomes. 2014; 10(4):853-863.

Map Positions


#	Map Name	Linkage Group	Bin	Position	Locus	MapViewer
1	Pear-integrated_consensus_map-IPCG-2017	LG5	N/A	74.48	JPsnpHou00247	View

Sequence

>JPsnpHou00247 ID=JPsnpHou00247; Name=JPsnpHou00247; organism=Pyrus pyrifolia; type=genetic_marker; length=813bp
CTCCAACAAACCAATCAAACCCTAGCAATGGCAAATCCTAAGGTTTTCTT
TGACATGACGATCGGAGGCCAGCCGGCCGGCCGCATCGTGATGGAGCTCT
TCGCCGACACCACCCCCCGCACCGCTGAGAACTTCAGGGCTCTCTGCACC
GGCGAGAAGGGCGTCGGCCGCTCCGGCAAGCCCCTCCACTACAAGGGATC
CGCCTTCCACCGCGTGATCCCGGGTTTCATGTGCCAGGGAGGTGATTTCA
CCGCCGGAAACGGCACCGGAGGCGAGTCGATCTACGGCGCCAAGTTCGCG
GACGAGAACTTCAACAAGAAGCACACCGGACCCGGAATCTTGTCCATGGC
CAACGCCGGTCCCGGAACTAATGGATCTCAGTTCTTCATCTGCACCGCCA
AGACCGAGTGGCTCGACGGCAAGCACGTGGTGTTCGGGCAGGTGGTCGAG
GGGCTCGATGTGGTGAAGAACATCGArAAGGTGGGGTCTGGACAGGGAAG
GACCTCGAAGCCGGTGGTGnTCGCCGACTGTGGCCAGCTCTCCTAGACGA
TGnCGTTTCGACTGCTCATCTGTGGATGATGGAAACGTCGTCGTTCTATG
TCTTTGTTATTATGAGTCTTTAAATTTGGGTACTAATTAGGTGGCGTCAT
ATTAGGGTTTGGGTTATGGACCTTATTATGGTTTAATTCTCTGATTTTCC
GTCTAATGCTCTTCCGGTGGTTTCTCATCTGAGACTCTTTATTCTCTGTC
GAACTGAGCTATTATCnTTAAATAAATTAGGCTTTTTTTCCCACTAAAAA
AAAAAAAAAACAA