JPsnpHou00453, JPsnpHou00453 (genetic_marker) Pyrus pyrifolia

Marker Overview


Name	JPsnpHou00453
dbSNP ID	N/A
Type	SNP
SNP Alleles	A/G
5' Flanking Sequence	GCCAATTTCGCCATAGTTACCGCTTGTTACTGCGGGGCTCGTGAATATGTGGGAGTAACT CGAAAAACTGGACCTGATGATCTGGTGAACTCTGCAATTGCTGGGTTTGGTACTGGTGCC ATTCTCGGGCGTCTTCAGGGTGGTGAAATTGGTGCTGTCCGCTACTCAATCATCTTTACC GTTGTTGGGACAACTGTGGATTATGCTACAATTAAACTAAGACCTGTGTTAAAGAGCTAC AAGGAATCTATGCTTGGGAGTAATGACGGTTCACAGAAGAATGACGGTTGGCTGAAAATG CCTGACTGGTCTCCTATCAAAGTACTTGATGAGGAAGCCCTTGCTGCAAAACAGGCTCGT GAACAAAAGGTGCATGCACAGAGGGCAGCACTTGGTAACCTAACCAAAGAAGAGTCCTAA AATTTTGTGGCATGTATCTTGAACTTTCATATATGTCAATAATAAGGTTTCGGGGC
3' Flanking Sequence	TGCTTCCTTGAGTTTTAGTTGCCTTTGTGTTTGCCATTGTATCTCCCGCTTTAGGGATGA ATTTTCAATTTCTACTTGTATGTAGAAGATAGAAATAGGAAAGGAGATTATGGACTTTCG GAATCAAACATTCACATTTCTTGGCCAAGTGTTTGCACTCTCTACCATGGATGCCGTCTA TTCGTTACCTTAAAGTGATAGCAGTAATGTTTTTGCAACTCTTGGCTTCCAATGCGAACA ACTTACAATGAACAGATTACTAAC
Species	Pyrus pyrifolia
Publication	[view all]
Contact	Toshiya Yamamoto
Comment	SNP position in sequence: 477

Contact

Name

Details

Toshiya Yamamoto

First name:	Toshiya
Last name:	Yamamoto
Institution:	National Institute of Fruit Tree Science, Graduate School of Life and Environmental Sciences, University of Tsukuba
Address:	National Institute of Fruit Tree Science, 2-1 Fujimoto, Tsukuba, Ibaraki 305-8605, Japan
Country:	Japan
Email:	toshiya@affrc.go.jp
Last update:	Apr 2014

Publications


Year	Publication
2014	Terakami S, Nishitani C, Kunihisa M, Shirasawa K, Sato S, Tabata S, Kurita K, Kanamori H, Katayose Y, Takada N, Saito T, Yamamoto T. Transcriptome-based single nucleotide polymorphism markers for genome mapping in Japanese pear (Pyrus pyrifolia Nakai). Tree genetics & genomes. 2014; 10(4):853-863.

Map Positions


#	Map Name	Linkage Group	Bin	Position	Locus	MapViewer
1	Pear-integrated_consensus_map-IPCG-2017	LG10	N/A	117.44	JPsnpHou00453	View

Sequence

>JPsnpHou00453 ID=JPsnpHou00453; Name=JPsnpHou00453; organism=Pyrus pyrifolia; type=genetic_marker; length=741bp
GCCAATTTCGCCATAGTTACCGCTTGTTACTGCGGGGCTCGTGAATATGT
GGGAGTAACTCGAAAAACTGGACCTGATGATCTGGTGAACTCTGCAATTG
CTGGGTTTGGTACTGGTGCCATTCTCGGGCGTCTTCAGGGTGGTGAAATT
GGTGCTGTCCGCTACTCAATCATCTTTACCGTTGTTGGGACAACTGTGGA
TTATGCTACAATTAAACTAAGACCTGTGTTAAAGAGCTACAAGGAATCTA
TGCTTGGGAGTAATGACGGTTCACAGAAGAATGACGGTTGGCTGAAAATG
CCTGACTGGTCTCCTATCAAAGTACTTGATGAGGAAGCCCTTGCTGCAAA
ACAGGCTCGTGAACAAAAGGTGCATGCACAGAGGGCAGCACTTGGTAACC
TAACCAAAGAAGAGTCCTAAAATTTTGTGGCATGTATCTTGAACTTTCAT
ATATGTCAATAATAAGGTTTCGGGGCrTGCTTCCTTGAGTTTTAGTTGCC
TTTGTGTTTGCCATTGTATCTCCCGCTTTAGGGATGAATTTTCAATTTCT
ACTTGTATGTAGAAGATAGAAATAGGAAAGGAGATTATGGACTTTCGGAA
TCAAACATTCACATTTCTTGGCCAAGTGTTTGCACTCTCTACCATGGATG
CCGTCTATTCGTTACCTTAAAGTGATAGCAGTAATGTTTTTGCAACTCTT
GGCTTCCAATGCGAACAACTTACAATGAACAGATTACTAAC