JPsnpHou00589, JPsnpHou00589 (genetic_marker) Pyrus pyrifolia

Marker Overview


Name	JPsnpHou00589
dbSNP ID	N/A
Type	SNP
SNP Alleles	T/C
5' Flanking Sequence	CTCGAGGTCAAATGGCAAAGAGTTACTTCAAGCAAGAACATGATCTGGAGAAGAGACGGG CAGAGGCTGCTAGGATCAGAGATAAATACCCAGATAGAATTCCAGTGATTGTGGAGAAGG TAGAAAGAAGTGATATCCCAAACATTGATAAGAAAAAGTACCTTGTCCCGGCCGATCTAA CTGTGGGACAATTTGTTTATGTTATCCGCAAAAGGATCAAGTTAAGTGCAGAAAAGGCAA TCTTTATATTTGTGGACAGTGTGCTCCCACCAACAGGTGCAATTATGTCTGCCATATATG AAGAGAAGAAGGATGAAGACGGGTTTCTCTATGTCACGTACAGCGGTGAGAATACATTTG GTTATCAGATTCCACTGTGTAGCCCCTGATTATTTGGATACACCAATCTTCATCCATTCC CGGCATGTTTGATTTCATCTCTGCGATCTTCCTTTCCTTATGCTGATGCTTCTGT
3' Flanking Sequence	CTTATGCCTACTTGATAAAACACCTTCGCGGTGGTAATATGTATAGTCnCATATTGTACA AAATCTCGAAGTTCTGGTTTACGATTAAAATTTACGCTTGTTTCAGTTCGTAATTATTGA ATGAAGATCTCTGATCAGTGCTAGTTTTTGCTGGTCATGGTTATGTCGGGGTGCGACTTT GTTAAACGTTTATTAGAGTATATGCTATAAAACGTATATAATATGCCAGAAACAAAAAAA ACCGAAGACTGCCAAGGCACACAGGGGATAGG
Species	Pyrus pyrifolia
Publication	[view all]
Contact	Toshiya Yamamoto
Comment	SNP position in sequence: 476

Contact

Name

Details

Toshiya Yamamoto

First name:	Toshiya
Last name:	Yamamoto
Institution:	National Institute of Fruit Tree Science, Graduate School of Life and Environmental Sciences, University of Tsukuba
Address:	National Institute of Fruit Tree Science, 2-1 Fujimoto, Tsukuba, Ibaraki 305-8605, Japan
Country:	Japan
Email:	toshiya@affrc.go.jp
Last update:	Apr 2014

Publications


Year	Publication
2014	Terakami S, Nishitani C, Kunihisa M, Shirasawa K, Sato S, Tabata S, Kurita K, Kanamori H, Katayose Y, Takada N, Saito T, Yamamoto T. Transcriptome-based single nucleotide polymorphism markers for genome mapping in Japanese pear (Pyrus pyrifolia Nakai). Tree genetics & genomes. 2014; 10(4):853-863.

Map Positions


#	Map Name	Linkage Group	Bin	Position	Locus	MapViewer
1	Pear-integrated_consensus_map-IPCG-2017	LG6	N/A	56.02	JPsnpHou00589	View

Sequence

>JPsnpHou00589 ID=JPsnpHou00589; Name=JPsnpHou00589; organism=Pyrus pyrifolia; type=genetic_marker; length=748bp
CTCGAGGTCAAATGGCAAAGAGTTACTTCAAGCAAGAACATGATCTGGAG
AAGAGACGGGCAGAGGCTGCTAGGATCAGAGATAAATACCCAGATAGAAT
TCCAGTGATTGTGGAGAAGGTAGAAAGAAGTGATATCCCAAACATTGATA
AGAAAAAGTACCTTGTCCCGGCCGATCTAACTGTGGGACAATTTGTTTAT
GTTATCCGCAAAAGGATCAAGTTAAGTGCAGAAAAGGCAATCTTTATATT
TGTGGACAGTGTGCTCCCACCAACAGGTGCAATTATGTCTGCCATATATG
AAGAGAAGAAGGATGAAGACGGGTTTCTCTATGTCACGTACAGCGGTGAG
AATACATTTGGTTATCAGATTCCACTGTGTAGCCCCTGATTATTTGGATA
CACCAATCTTCATCCATTCCCGGCATGTTTGATTTCATCTCTGCGATCTT
CCTTTCCTTATGCTGATGCTTCTGTyCTTATGCCTACTTGATAAAACACC
TTCGCGGTGGTAATATGTATAGTCnCATATTGTACAAAATCTCGAAGTTC
TGGTTTACGATTAAAATTTACGCTTGTTTCAGTTCGTAATTATTGAATGA
AGATCTCTGATCAGTGCTAGTTTTTGCTGGTCATGGTTATGTCGGGGTGC
GACTTTGTTAAACGTTTATTAGAGTATATGCTATAAAACGTATATAATAT
GCCAGAAACAAAAAAAACCGAAGACTGCCAAGGCACACAGGGGATAGG