JPsnpHou00615, JPsnpHou00615 (genetic_marker) Pyrus pyrifolia

Marker Overview


Name	JPsnpHou00615
dbSNP ID	N/A
Type	SNP
SNP Alleles	T/G
5' Flanking Sequence	CAGACCTTCTTGGTGAGCTGAACTTGAATGTCAGAGAGATCCATTCTAGAAAGCCACAGA GTTATAGAACCAGGGTTTCTGATGAATTTCGGAAATCAAAGGGTCTTATTCTTGTGACTT CTGATGTATCTGCACGTGGGGTTGATTATCCAGATGTTTCCCTAGTCATACAGGTGGGCG TGCCAGCCGATAGACAACAGTATATACATCGACTTGGAAGAACTGGTCGTAAAGGCAAAG TGGGGCAAGGGATATTGCTACTGGCTCCTTGGGAGGAGTTCTTCTTGTCCAATATTAAGG ATTTGCCAATATCCAAGGCTGCTGTACCGTCAGTCGATCCAGATACTACGAAGAAGGTGG AACGAGCACTGTCCAATGTGGAGATGAAGAACAAAGAAGCAGCGTACCAAGCATGGCTCG GGTATTACAATTCAAACAAGAAAGTGGGGCGCGATAAGCATAGGCTTGTGGAGCT
3' Flanking Sequence	GCTAATGAGTTTAGCCGAAGCATGGGGCTGGACAACCCTCCGGCCATTCCCAAGCTCGTT CTTGGCAAGATGGGGCTTAAGAATGTCCCTGGATTGCGTTCCAAGTAGCTCCGTTAGCAG CCAACnTAGTCAGTTGATTCGGTTGTCCCGATTACTTGTTAACAATTGAAAAACTTAAAT TTAATGTTAGAGATTTTGTAGTTGAAGTTGAACAACGTATGCTGCTATGCGATGCGAGAC AGACAACACAAACTTAAACACAAACTATTAGTTAGTTT
Species	Pyrus pyrifolia
Publication	[view all]
Contact	Toshiya Yamamoto
Comment	SNP position in sequence: 476

Contact

Name

Details

Toshiya Yamamoto

First name:	Toshiya
Last name:	Yamamoto
Institution:	National Institute of Fruit Tree Science, Graduate School of Life and Environmental Sciences, University of Tsukuba
Address:	National Institute of Fruit Tree Science, 2-1 Fujimoto, Tsukuba, Ibaraki 305-8605, Japan
Country:	Japan
Email:	toshiya@affrc.go.jp
Last update:	Apr 2014

Publications


Year	Publication
2014	Terakami S, Nishitani C, Kunihisa M, Shirasawa K, Sato S, Tabata S, Kurita K, Kanamori H, Katayose Y, Takada N, Saito T, Yamamoto T. Transcriptome-based single nucleotide polymorphism markers for genome mapping in Japanese pear (Pyrus pyrifolia Nakai). Tree genetics & genomes. 2014; 10(4):853-863.

Map Positions


#	Map Name	Linkage Group	Bin	Position	Locus	MapViewer
1	Pear-integrated_consensus_map-IPCG-2017	LG7	N/A	46.37	JPsnpHou00615	View

Sequence

>JPsnpHou00615 ID=JPsnpHou00615; Name=JPsnpHou00615; organism=Pyrus pyrifolia; type=genetic_marker; length=754bp
CAGACCTTCTTGGTGAGCTGAACTTGAATGTCAGAGAGATCCATTCTAGA
AAGCCACAGAGTTATAGAACCAGGGTTTCTGATGAATTTCGGAAATCAAA
GGGTCTTATTCTTGTGACTTCTGATGTATCTGCACGTGGGGTTGATTATC
CAGATGTTTCCCTAGTCATACAGGTGGGCGTGCCAGCCGATAGACAACAG
TATATACATCGACTTGGAAGAACTGGTCGTAAAGGCAAAGTGGGGCAAGG
GATATTGCTACTGGCTCCTTGGGAGGAGTTCTTCTTGTCCAATATTAAGG
ATTTGCCAATATCCAAGGCTGCTGTACCGTCAGTCGATCCAGATACTACG
AAGAAGGTGGAACGAGCACTGTCCAATGTGGAGATGAAGAACAAAGAAGC
AGCGTACCAAGCATGGCTCGGGTATTACAATTCAAACAAGAAAGTGGGGC
GCGATAAGCATAGGCTTGTGGAGCTkGCTAATGAGTTTAGCCGAAGCATG
GGGCTGGACAACCCTCCGGCCATTCCCAAGCTCGTTCTTGGCAAGATGGG
GCTTAAGAATGTCCCTGGATTGCGTTCCAAGTAGCTCCGTTAGCAGCCAA
CnTAGTCAGTTGATTCGGTTGTCCCGATTACTTGTTAACAATTGAAAAAC
TTAAATTTAATGTTAGAGATTTTGTAGTTGAAGTTGAACAACGTATGCTG
CTATGCGATGCGAGACAGACAACACAAACTTAAACACAAACTATTAGTTA
GTTT