JPsnpHou00195, JPsnpHou00195 (genetic_marker) Pyrus pyrifolia

Marker Overview


Name	JPsnpHou00195
dbSNP ID	N/A
Type	SNP
SNP Alleles	C/G
5' Flanking Sequence	TCGATTTTCCAGAAATGAAGTTTAGTTTGTACTTTTTGGGCTATGAGGACCCTGCTTCAG CTCCAACTAACTCGGTTGATAGAACAGTTTGGACTTTTGGTCGGAAGGCTACAATTGAGT TGACACATAATTGGGGTACTGAAAGTGATCCAGAATTCAAAGGATATCACAATGGGAATT CAGAACCTCGTGGCTTTGGACACATTGGCATCACCGTTGATGATATATACAAGGCATGTG AGAGATTTGAAAGTCTTGGGGTAGAATTTGTGAAAAAGCCAGATGATGGAAAGATGAAAG GGCTTGCATTCATTAAGGATCCTGATGGTTATTGGATCGAGATCTTTGACCTTAAAACTA TAGGAAAAGTCACAGCTGATGCTTCTTGAGTTCATGGCACCTGAATTTCTGGTGAGCGTA GGTGAAAACTTGCAGGCGCAGCGATTCTTAGTTTTTCCTGATATACTCCGAGTC
3' Flanking Sequence	AGACCAGATGTTATGGCACTTTTTCTTGTGTGTTTGTTTTGTTTCTTGTTACTATGGTGT GTGGAGTTTATGGGTTGCGTAAGTTGTTCTTGGTTCAAGTTAGCTTTGTTTTTGTTGTCT ACTCGGCTGTTTCTTTATTACAAACTTAGTCCTTCTGATCTCAATGTGCAACTTTTGCAA GTATTGGGTTTCTAAATCCATCATTACTAAAGCAGTCAAATTCATAATATTTATACGAAT TGAGTTTCTTAGAAAAAAAAAAAAAAACTAAG
Species	Pyrus pyrifolia
Publication	[view all]
Contact	Toshiya Yamamoto
Comment	SNP position in sequence: 475

Contact

Name

Details

Toshiya Yamamoto

First name:	Toshiya
Last name:	Yamamoto
Institution:	National Institute of Fruit Tree Science, Graduate School of Life and Environmental Sciences, University of Tsukuba
Address:	National Institute of Fruit Tree Science, 2-1 Fujimoto, Tsukuba, Ibaraki 305-8605, Japan
Country:	Japan
Email:	toshiya@affrc.go.jp
Last update:	Apr 2014

Publications


Year	Publication
2014	Terakami S, Nishitani C, Kunihisa M, Shirasawa K, Sato S, Tabata S, Kurita K, Kanamori H, Katayose Y, Takada N, Saito T, Yamamoto T. Transcriptome-based single nucleotide polymorphism markers for genome mapping in Japanese pear (Pyrus pyrifolia Nakai). Tree genetics & genomes. 2014; 10(4):853-863.

Map Positions


#	Map Name	Linkage Group	Bin	Position	Locus	MapViewer
1	Pear-integrated_consensus_map-IPCG-2017	LG11	N/A	73.76	JPsnpHou00195	View

Sequence

>JPsnpHou00195 ID=JPsnpHou00195; Name=JPsnpHou00195; organism=Pyrus pyrifolia; type=genetic_marker; length=747bp
TCGATTTTCCAGAAATGAAGTTTAGTTTGTACTTTTTGGGCTATGAGGAC
CCTGCTTCAGCTCCAACTAACTCGGTTGATAGAACAGTTTGGACTTTTGG
TCGGAAGGCTACAATTGAGTTGACACATAATTGGGGTACTGAAAGTGATC
CAGAATTCAAAGGATATCACAATGGGAATTCAGAACCTCGTGGCTTTGGA
CACATTGGCATCACCGTTGATGATATATACAAGGCATGTGAGAGATTTGA
AAGTCTTGGGGTAGAATTTGTGAAAAAGCCAGATGATGGAAAGATGAAAG
GGCTTGCATTCATTAAGGATCCTGATGGTTATTGGATCGAGATCTTTGAC
CTTAAAACTATAGGAAAAGTCACAGCTGATGCTTCTTGAGTTCATGGCAC
CTGAATTTCTGGTGAGCGTAGGTGAAAACTTGCAGGCGCAGCGATTCTTA
GTTTTTCCTGATATACTCCGAGTCsAGACCAGATGTTATGGCACTTTTTC
TTGTGTGTTTGTTTTGTTTCTTGTTACTATGGTGTGTGGAGTTTATGGGT
TGCGTAAGTTGTTCTTGGTTCAAGTTAGCTTTGTTTTTGTTGTCTACTCG
GCTGTTTCTTTATTACAAACTTAGTCCTTCTGATCTCAATGTGCAACTTT
TGCAAGTATTGGGTTTCTAAATCCATCATTACTAAAGCAGTCAAATTCAT
AATATTTATACGAATTGAGTTTCTTAGAAAAAAAAAAAAAAACTAAG