JPsnpHou00192, JPsnpHou00192 (genetic_marker) Pyrus pyrifolia

Marker Overview


Name	JPsnpHou00192
dbSNP ID	N/A
Type	SNP
SNP Alleles	A/G
5' Flanking Sequence	ATCCAACCATGCCATGAGAGCCAGCAAGAAGAATATCGCGACGGGGGTTGCCTTCCACAT CAGCCTACACTTCCACATCAGAAATTGTAATTTTCATAGGGTGTATTATTTGACTGATTC TCTTCGTTGATCATGTTTAAGGAGGAAGTAATTTGGGGGAGAATTCTTAAGCGAGCGCAG TCCAATTGCCTTGCTGCTGAAGATTAGACCATAAGATTATGTATATGGCACTTGGAACTA AATCTGTTATACAGTGTATAAATTCAAAACTGAGAACCAAAACCAAAAATAATGTAAATC AATGATCGAAAGAATGAATAATAGTTACAAAGAGTTCACTTATTGATCCTGGAGACATTT CTCTAGGTACTGATTTTCCCTCCTGATGGCATCAAGATCGGCTTGTAGTTTGTCTACATT TAAGCTTCGCGAGGCCATGGCCGCTAGCTTCTTTTCATGTTCACCTACTTCTC
3' Flanking Sequence	TCGTATTCTATCAGTTGCCAAGATTTTCTCACGAATCTGTTCGAAGCACTTGTGGATGCT AGTGAGAAGCCTATAAGCCTGCTTCCCAACTGCATCTTTCTTTGCTTCCCTTCAAATTAA TAAGTACCGTGATGGACTTGTCGTAACTACGTATTTTTAAGTCACGGACAGTTTATGGTA AATGAATTTCGTACCTGAACACCATTTCATCTACAACAGCATACGTCCGATGAAGACGTT CTTGAATAGAGTTACTCTCTAACTGAAGCTCCCTGGTGTCTTTTAAGATCTGCCCTATGT CAGCTTCTTGTTTCCGACTGTTCTTTGTGATCTCCTTGACCCTTTCAATGTAGGACTTTC TTGATGCCAGCTTGGGCTGCTTCTCTAGATCCGTTGACAGTTTAGAAAGTTCCTCCTCCC TACAGAATTATAAATGCGTCACCAATAAGCAAGCAACCGAAGTTGTGAAATTGAATATTA GTAAGATAATGAAACAGACAATGGGCAATCTT
Species	Pyrus pyrifolia
Publication	[view all]
Contact	Toshiya Yamamoto
Comment	SNP position in sequence: 474

Contact

Name

Details

Toshiya Yamamoto

First name:	Toshiya
Last name:	Yamamoto
Institution:	National Institute of Fruit Tree Science, Graduate School of Life and Environmental Sciences, University of Tsukuba
Address:	National Institute of Fruit Tree Science, 2-1 Fujimoto, Tsukuba, Ibaraki 305-8605, Japan
Country:	Japan
Email:	toshiya@affrc.go.jp
Last update:	Apr 2014

Publications


Year	Publication
2014	Terakami S, Nishitani C, Kunihisa M, Shirasawa K, Sato S, Tabata S, Kurita K, Kanamori H, Katayose Y, Takada N, Saito T, Yamamoto T. Transcriptome-based single nucleotide polymorphism markers for genome mapping in Japanese pear (Pyrus pyrifolia Nakai). Tree genetics & genomes. 2014; 10(4):853-863.

Map Positions


#	Map Name	Linkage Group	Bin	Position	Locus	MapViewer
1	Pear-integrated_consensus_map-IPCG-2017	LG3	N/A	95.69	JPsnpHou00192	View

Sequence

>JPsnpHou00192 ID=JPsnpHou00192; Name=JPsnpHou00192; organism=Pyrus pyrifolia; type=genetic_marker; length=986bp
ATCCAACCATGCCATGAGAGCCAGCAAGAAGAATATCGCGACGGGGGTTG
CCTTCCACATCAGCCTACACTTCCACATCAGAAATTGTAATTTTCATAGG
GTGTATTATTTGACTGATTCTCTTCGTTGATCATGTTTAAGGAGGAAGTA
ATTTGGGGGAGAATTCTTAAGCGAGCGCAGTCCAATTGCCTTGCTGCTGA
AGATTAGACCATAAGATTATGTATATGGCACTTGGAACTAAATCTGTTAT
ACAGTGTATAAATTCAAAACTGAGAACCAAAACCAAAAATAATGTAAATC
AATGATCGAAAGAATGAATAATAGTTACAAAGAGTTCACTTATTGATCCT
GGAGACATTTCTCTAGGTACTGATTTTCCCTCCTGATGGCATCAAGATCG
GCTTGTAGTTTGTCTACATTTAAGCTTCGCGAGGCCATGGCCGCTAGCTT
CTTTTCATGTTCACCTACTTCTCrTCGTATTCTATCAGTTGCCAAGATTT
TCTCACGAATCTGTTCGAAGCACTTGTGGATGCTAGTGAGAAGCCTATAA
GCCTGCTTCCCAACTGCATCTTTCTTTGCTTCCCTTCAAATTAATAAGTA
CCGTGATGGACTTGTCGTAACTACGTATTTTTAAGTCACGGACAGTTTAT
GGTAAATGAATTTCGTACCTGAACACCATTTCATCTACAACAGCATACGT
CCGATGAAGACGTTCTTGAATAGAGTTACTCTCTAACTGAAGCTCCCTGG
TGTCTTTTAAGATCTGCCCTATGTCAGCTTCTTGTTTCCGACTGTTCTTT
GTGATCTCCTTGACCCTTTCAATGTAGGACTTTCTTGATGCCAGCTTGGG
CTGCTTCTCTAGATCCGTTGACAGTTTAGAAAGTTCCTCCTCCCTACAGA
ATTATAAATGCGTCACCAATAAGCAAGCAACCGAAGTTGTGAAATTGAAT
ATTAGTAAGATAATGAAACAGACAATGGGCAATCTT