JPsnpHou00355, JPsnpHou00355 (genetic_marker) Pyrus pyrifolia

Marker Overview


Name	JPsnpHou00355
dbSNP ID	N/A
Type	SNP
SNP Alleles	T/G
5' Flanking Sequence	GTGGAGAGCAACAGTGGTGGGGGTAGTGAGGAAATGTTGATCCGGATGAAGCAGCGGCTG GTTTCGCAGGTGTTGGAAATCGGGATTATTTTCCACTCGGTGATAATTGGGGTGACGATG GGGATGTCGCAGAACCAGTGCACCATCCGGCCGTTGGTCGCTGCGCTGTCGTTTCACCAG ATTTTCGAAGGGATGGGACTCGGAGGATGCATTGCTCAGGCAGGATTTAAGTTTGGGACA ACAGCCTACATGTGCTTCATGTTTGCAGTGACAACTCCAATGGGGATAGTATTGGGGATG ATCTTATTCTCTGCGACAGGTTATGACGATAGTAACCCTAATGCCCTAATCTTGGAGGGT TTGTTGGGCTCCTTCTCCTCGGGCATACTTATCTACATGGCTCTGGTCGATCTCATTGCT CTCGATTTCTTCCACAACAAGATGATGAGCTCTAACTCATGGCTGCGGAAAAC
3' Flanking Sequence	TCGTTCATCGCTCTTGTTCTTGGCTCTACCTCTATGTCCATCCTTGCCCTTTGGGCATAG AATTTGCTCTAGTAGCACATTGTTGTAATCACGTACTCCATCTGGATCTTTTTAAGAAGT AGAGGAACGAAATCGAAAATGTTAACATCAATTAGGCGATTGGGTTCTACCTCTATGAGT TATATAAGATGAATT
Species	Pyrus pyrifolia
Publication	[view all]
Contact	Toshiya Yamamoto
Comment	SNP position in sequence: 474

Contact

Name

Details

Toshiya Yamamoto

First name:	Toshiya
Last name:	Yamamoto
Institution:	National Institute of Fruit Tree Science, Graduate School of Life and Environmental Sciences, University of Tsukuba
Address:	National Institute of Fruit Tree Science, 2-1 Fujimoto, Tsukuba, Ibaraki 305-8605, Japan
Country:	Japan
Email:	toshiya@affrc.go.jp
Last update:	Apr 2014

Publications


Year	Publication
2014	Terakami S, Nishitani C, Kunihisa M, Shirasawa K, Sato S, Tabata S, Kurita K, Kanamori H, Katayose Y, Takada N, Saito T, Yamamoto T. Transcriptome-based single nucleotide polymorphism markers for genome mapping in Japanese pear (Pyrus pyrifolia Nakai). Tree genetics & genomes. 2014; 10(4):853-863.

Map Positions


#	Map Name	Linkage Group	Bin	Position	Locus	MapViewer
1	Pear-integrated_consensus_map-IPCG-2017	LG3	N/A	112.86	JPsnpHou00355	View

Sequence

>JPsnpHou00355 ID=JPsnpHou00355; Name=JPsnpHou00355; organism=Pyrus pyrifolia; type=genetic_marker; length=669bp
GTGGAGAGCAACAGTGGTGGGGGTAGTGAGGAAATGTTGATCCGGATGAA
GCAGCGGCTGGTTTCGCAGGTGTTGGAAATCGGGATTATTTTCCACTCGG
TGATAATTGGGGTGACGATGGGGATGTCGCAGAACCAGTGCACCATCCGG
CCGTTGGTCGCTGCGCTGTCGTTTCACCAGATTTTCGAAGGGATGGGACT
CGGAGGATGCATTGCTCAGGCAGGATTTAAGTTTGGGACAACAGCCTACA
TGTGCTTCATGTTTGCAGTGACAACTCCAATGGGGATAGTATTGGGGATG
ATCTTATTCTCTGCGACAGGTTATGACGATAGTAACCCTAATGCCCTAAT
CTTGGAGGGTTTGTTGGGCTCCTTCTCCTCGGGCATACTTATCTACATGG
CTCTGGTCGATCTCATTGCTCTCGATTTCTTCCACAACAAGATGATGAGC
TCTAACTCATGGCTGCGGAAAACkTCGTTCATCGCTCTTGTTCTTGGCTC
TACCTCTATGTCCATCCTTGCCCTTTGGGCATAGAATTTGCTCTAGTAGC
ACATTGTTGTAATCACGTACTCCATCTGGATCTTTTTAAGAAGTAGAGGA
ACGAAATCGAAAATGTTAACATCAATTAGGCGATTGGGTTCTACCTCTAT
GAGTTATATAAGATGAATT