JPsnpHou00462, JPsnpHou00462 (genetic_marker) Pyrus pyrifolia

Marker Overview


Name	JPsnpHou00462
dbSNP ID	N/A
Type	SNP
SNP Alleles	T/C
5' Flanking Sequence	TGCCTGGGGATGAAGTTACTGGATCACAAATGCAGGGAAAAAGGTCTTGAAATAAACTGT CCCATCTGCTGCGACTTTTTGTTTACCTCAAGTGCAACTGTGAGAGCTCTTCCTTGTGGC CATTACATGCATTCAGCTTGCTTCCAGGCATACACTTGCAGTCACTACATCTGCCCAATC TGTAGCAAATCTATGGGAGATATGGCGGTTTATTTTGGCATGCTTGATGCACTACTGGCT TCCGAGGAACTCCCAGAAGAATACAGGGATCGCTGTCAGGACATACTGTGCAACGACTGT GATAAGAAGGGGACCGCGCCGTTCCACTGGCTGTACCATAAGTGCAGGACTTGTGGATCC TATAACACCAAGATTATCAGGGTAGACTCCAACTCCCACTGCTTAACATCACACAACTGA TGGATGGCTTATGGACTTGCTGTTTTCCAACGAGTGTGTAAATACATTTTC
3' Flanking Sequence	TGGAGAATAACTTACATGAAACGGGGACGTCAAAGCAGTTGCATGCCATTACAACCCACA CATGGCTTTGTAAATTATGTGCACCACTATAGCTATTTCAATTTAATTTTGGCCATCGTT AATGTTCACATAAAAAAGGGAAAAAAAACTAAAGAGACTGCAACGGACACACAGGGGAGT AGG
Species	Pyrus pyrifolia
Publication	[view all]
Contact	Toshiya Yamamoto
Comment	SNP position in sequence: 472

Contact

Name

Details

Toshiya Yamamoto

First name:	Toshiya
Last name:	Yamamoto
Institution:	National Institute of Fruit Tree Science, Graduate School of Life and Environmental Sciences, University of Tsukuba
Address:	National Institute of Fruit Tree Science, 2-1 Fujimoto, Tsukuba, Ibaraki 305-8605, Japan
Country:	Japan
Email:	toshiya@affrc.go.jp
Last update:	Apr 2014

Publications


Year	Publication
2014	Terakami S, Nishitani C, Kunihisa M, Shirasawa K, Sato S, Tabata S, Kurita K, Kanamori H, Katayose Y, Takada N, Saito T, Yamamoto T. Transcriptome-based single nucleotide polymorphism markers for genome mapping in Japanese pear (Pyrus pyrifolia Nakai). Tree genetics & genomes. 2014; 10(4):853-863.

Map Positions


#	Map Name	Linkage Group	Bin	Position	Locus	MapViewer
1	Pear-integrated_consensus_map-IPCG-2017	LG16	N/A	21.47	JPsnpHou00462	View

Sequence

>JPsnpHou00462 ID=JPsnpHou00462; Name=JPsnpHou00462; organism=Pyrus pyrifolia; type=genetic_marker; length=655bp
TGCCTGGGGATGAAGTTACTGGATCACAAATGCAGGGAAAAAGGTCTTGA
AATAAACTGTCCCATCTGCTGCGACTTTTTGTTTACCTCAAGTGCAACTG
TGAGAGCTCTTCCTTGTGGCCATTACATGCATTCAGCTTGCTTCCAGGCA
TACACTTGCAGTCACTACATCTGCCCAATCTGTAGCAAATCTATGGGAGA
TATGGCGGTTTATTTTGGCATGCTTGATGCACTACTGGCTTCCGAGGAAC
TCCCAGAAGAATACAGGGATCGCTGTCAGGACATACTGTGCAACGACTGT
GATAAGAAGGGGACCGCGCCGTTCCACTGGCTGTACCATAAGTGCAGGAC
TTGTGGATCCTATAACACCAAGATTATCAGGGTAGACTCCAACTCCCACT
GCTTAACATCACACAACTGATGGATGGCTTATGGACTTGCTGTTTTCCAA
CGAGTGTGTAAATACATTTTCyTGGAGAATAACTTACATGAAACGGGGAC
GTCAAAGCAGTTGCATGCCATTACAACCCACACATGGCTTTGTAAATTAT
GTGCACCACTATAGCTATTTCAATTTAATTTTGGCCATCGTTAATGTTCA
CATAAAAAAGGGAAAAAAAACTAAAGAGACTGCAACGGACACACAGGGGA
GTAGG