JPsnpHou00140, JPsnpHou00140 (genetic_marker) Pyrus pyrifolia

Marker Overview


Name	JPsnpHou00140
dbSNP ID	N/A
Type	SNP
SNP Alleles	A/G
5' Flanking Sequence	TGCACTTGGAATTGATTTGACAACACTTGGATTAAACTTGAATTCAACAGAAAACCTTCA CAAGACTTTTGGTTCCCCATGGTCTGACGAGCCAGCTAAGGGTGATCCAGAGTTTAGTGT TCCACAATGTTACTATGCTAAACAACCGCCTGCACTACATCAAGGGTATTTTTCAAAGTT TTCCGTGGAAACGTTGTTCTATATCTTTTACAGCATGCCCAAAGACGAGGCCCAATTATA TGCTGCCAATGAACTCAATAATAGAGGCTGGTTTTATCACAAGGAACACCGCCTATGGTT CATAAGAGTACCCAACATGGAGCCAGTTGTGAAGACCAACACGTTTGAGAGAGGATCTTA TCACTGCTTTGATCCCAATACCTTTGAAACTATCCGAAAGGATAATTTTCTTGTGCATTA CGAGTTGTTGGAGAAGAGACCGGTGTTACCACAGCATTGACGGTCTTAAT
3' Flanking Sequence	TTTTAGAATGTAAAGTTTCAGTTGACGGATGTCATTCATTAGAACGTAATTCAGTTTCTC GTATCAATGTTCCTTCAATTTAGCAATTGTAAGCAATTGTCTTATACACCTTATTGCCGT GTTCAGCTAATCAGCTTCTTACCCTTCTGTTTTTACCAATTTATGCGACTGCTCGAACGA TAACTGTTGTCGGAAGTAGCTGCTGCTTTGACGCTGGGCTGCAAGGTTTAAGCATTGGAG GTAAAATTTGTTACTTAACAGTAGTTTGATTTTTAAAAGGGTCAACTGATTGGTTGAAAT TTTGCTATTAAAGTGCTTGTATGGACAAAAGTGTTTTGTAAAATTTCAACCTATTGTTAG AAGAC
Species	Pyrus pyrifolia
Publication	[view all]
Contact	Toshiya Yamamoto
Comment	SNP position in sequence: 471

Contact

Name

Details

Toshiya Yamamoto

First name:	Toshiya
Last name:	Yamamoto
Institution:	National Institute of Fruit Tree Science, Graduate School of Life and Environmental Sciences, University of Tsukuba
Address:	National Institute of Fruit Tree Science, 2-1 Fujimoto, Tsukuba, Ibaraki 305-8605, Japan
Country:	Japan
Email:	toshiya@affrc.go.jp
Last update:	Apr 2014

Publications


Year	Publication
2014	Terakami S, Nishitani C, Kunihisa M, Shirasawa K, Sato S, Tabata S, Kurita K, Kanamori H, Katayose Y, Takada N, Saito T, Yamamoto T. Transcriptome-based single nucleotide polymorphism markers for genome mapping in Japanese pear (Pyrus pyrifolia Nakai). Tree genetics & genomes. 2014; 10(4):853-863.

Map Positions


#	Map Name	Linkage Group	Bin	Position	Locus	MapViewer
1	Pear-integrated_consensus_map-IPCG-2017	LG11	N/A	68.73	JPsnpHou00140	View

Sequence

>JPsnpHou00140 ID=JPsnpHou00140; Name=JPsnpHou00140; organism=Pyrus pyrifolia; type=genetic_marker; length=836bp
TGCACTTGGAATTGATTTGACAACACTTGGATTAAACTTGAATTCAACAG
AAAACCTTCACAAGACTTTTGGTTCCCCATGGTCTGACGAGCCAGCTAAG
GGTGATCCAGAGTTTAGTGTTCCACAATGTTACTATGCTAAACAACCGCC
TGCACTACATCAAGGGTATTTTTCAAAGTTTTCCGTGGAAACGTTGTTCT
ATATCTTTTACAGCATGCCCAAAGACGAGGCCCAATTATATGCTGCCAAT
GAACTCAATAATAGAGGCTGGTTTTATCACAAGGAACACCGCCTATGGTT
CATAAGAGTACCCAACATGGAGCCAGTTGTGAAGACCAACACGTTTGAGA
GAGGATCTTATCACTGCTTTGATCCCAATACCTTTGAAACTATCCGAAAG
GATAATTTTCTTGTGCATTACGAGTTGTTGGAGAAGAGACCGGTGTTACC
ACAGCATTGACGGTCTTAATrTTTTAGAATGTAAAGTTTCAGTTGACGGA
TGTCATTCATTAGAACGTAATTCAGTTTCTCGTATCAATGTTCCTTCAAT
TTAGCAATTGTAAGCAATTGTCTTATACACCTTATTGCCGTGTTCAGCTA
ATCAGCTTCTTACCCTTCTGTTTTTACCAATTTATGCGACTGCTCGAACG
ATAACTGTTGTCGGAAGTAGCTGCTGCTTTGACGCTGGGCTGCAAGGTTT
AAGCATTGGAGGTAAAATTTGTTACTTAACAGTAGTTTGATTTTTAAAAG
GGTCAACTGATTGGTTGAAATTTTGCTATTAAAGTGCTTGTATGGACAAA
AGTGTTTTGTAAAATTTCAACCTATTGTTAGAAGAC