JPsnpHou00178, JPsnpHou00178 (genetic_marker) Pyrus pyrifolia

Marker Overview


Name	JPsnpHou00178
dbSNP ID	N/A
Type	SNP
SNP Alleles	T/C
5' Flanking Sequence	GCTAAGGAGGCATTTGGAGCATTGGCAAAAGCCCAACAACTATTACTTGATCAACAGGAA AGGGATTATATCATTAGCCAAGTAAATGCCGCCAAAGAAGAACTTAGAGCTAAAAGGAAG AAGCAGTTGAAGAAAGATACAGCTTCTAAAATAAAATCATTGGTTGATGAGGGAAAATAC GAGCACCAGTATGAACAGTCAGAAGAGTTCCAGCAAGAACTCAAAATGAAGGTTCGAGAT ATATTAACAGAACAAGAATGGCGAAGGAGAAAAATGCAAATGAGGATTTCAGAAGAGGAA GGTAGATTGAAAAAAGATGAAGAAGAAACCAAAGAGATGTGGAAAAGGAAACGGGAGCAT GAGGAACAATGGGAAGGAACAAGAGAACAGAGGGTTTCAAGCTGGAGGGATTTTATGAAG GGTGGAAAGAAGGCCAAAAAGGGAGAAATTCGACCTCCTAAGCTCAAGAC
3' Flanking Sequence	GAAGACCCTAACAAATCTTACGTTCAAAGGCCAGTAAAACGAGGTTGATTTTGTTTTGGC CTGAGGGTCGTTGTAGGTTGCTGCATTGGTTAAAGAAGCAGATATTCGAAAGCCTGGTAT GTGGAAGATCAGTATGAATCTTTGACTTATATGTAAACAGGAGTATTGTTGTnnCCATGT GAGATATGATTAATATATTGTTCTAATACCTCGTACAGTATAAATATAATCTGATCAGGA ATTCTAGG
Species	Pyrus pyrifolia
Publication	[view all]
Contact	Toshiya Yamamoto
Comment	SNP position in sequence: 471

Contact

Name

Details

Toshiya Yamamoto

First name:	Toshiya
Last name:	Yamamoto
Institution:	National Institute of Fruit Tree Science, Graduate School of Life and Environmental Sciences, University of Tsukuba
Address:	National Institute of Fruit Tree Science, 2-1 Fujimoto, Tsukuba, Ibaraki 305-8605, Japan
Country:	Japan
Email:	toshiya@affrc.go.jp
Last update:	Apr 2014

Publications


Year	Publication
2014	Terakami S, Nishitani C, Kunihisa M, Shirasawa K, Sato S, Tabata S, Kurita K, Kanamori H, Katayose Y, Takada N, Saito T, Yamamoto T. Transcriptome-based single nucleotide polymorphism markers for genome mapping in Japanese pear (Pyrus pyrifolia Nakai). Tree genetics & genomes. 2014; 10(4):853-863.

Map Positions


#	Map Name	Linkage Group	Bin	Position	Locus	MapViewer
1	Pear-integrated_consensus_map-IPCG-2017	LG11	N/A	82.45	JPsnpHou00178	View

Sequence

>JPsnpHou00178 ID=JPsnpHou00178; Name=JPsnpHou00178; organism=Pyrus pyrifolia; type=genetic_marker; length=719bp
GCTAAGGAGGCATTTGGAGCATTGGCAAAAGCCCAACAACTATTACTTGA
TCAACAGGAAAGGGATTATATCATTAGCCAAGTAAATGCCGCCAAAGAAG
AACTTAGAGCTAAAAGGAAGAAGCAGTTGAAGAAAGATACAGCTTCTAAA
ATAAAATCATTGGTTGATGAGGGAAAATACGAGCACCAGTATGAACAGTC
AGAAGAGTTCCAGCAAGAACTCAAAATGAAGGTTCGAGATATATTAACAG
AACAAGAATGGCGAAGGAGAAAAATGCAAATGAGGATTTCAGAAGAGGAA
GGTAGATTGAAAAAAGATGAAGAAGAAACCAAAGAGATGTGGAAAAGGAA
ACGGGAGCATGAGGAACAATGGGAAGGAACAAGAGAACAGAGGGTTTCAA
GCTGGAGGGATTTTATGAAGGGTGGAAAGAAGGCCAAAAAGGGAGAAATT
CGACCTCCTAAGCTCAAGACyGAAGACCCTAACAAATCTTACGTTCAAAG
GCCAGTAAAACGAGGTTGATTTTGTTTTGGCCTGAGGGTCGTTGTAGGTT
GCTGCATTGGTTAAAGAAGCAGATATTCGAAAGCCTGGTATGTGGAAGAT
CAGTATGAATCTTTGACTTATATGTAAACAGGAGTATTGTTGTnnCCATG
TGAGATATGATTAATATATTGTTCTAATACCTCGTACAGTATAAATATAA
TCTGATCAGGAATTCTAGG