JPsnpHou00227, JPsnpHou00227 (genetic_marker) Pyrus pyrifolia

Marker Overview


Name	JPsnpHou00227
dbSNP ID	N/A
Type	SNP
SNP Alleles	A/C
5' Flanking Sequence	CGATGGTGGTGCTAAGTAGCTTAGCAGGAGTTGAGGAGGGAAAGGAGGCTATTGTGGAGG AAGGCGGGCTGGCAGCGCTTGTGGAGGCGATTGAGGATGGGTCGGTGAAAGGAAAGGAGT TTGCGGTGTTGACACTGTTGCATCTGTGCACTGAGAGTGTGAGGAACAGAGGGTTGCTTG TGAGGGAAGGAGGGATTCCGCCGTTGGTTGCGCTTTCGCAGACGGGGACTGTTAAAGCTA AGCACAAGGCTGAAACGCTTCTTGGGTACTTGAGAGAACCGAGACAAGAAGCGTCCTCTT CGGCTCTTTAGAGGAGCGAAGGGAGGTACTTTCACTACTTAGAGAAGAAGCTATACTATG TGTCTGTCTCATGTGGTTTGAGTAGCGTTCGGTTGCACTTGTATATAGGAAGTGTTGGTG TTTTCATGGTTTGTTGTAACTTTGTACAGTGTGGCTGAGAACTGGGA
3' Flanking Sequence	GAAGAATATGATATTGTTGTAGGAAGAAGGGAGAGAGATTAGAGGAAGCTAGTATGCAAG AGACTACTGACTTCTTAGTAGTTTAGATGTATGAATTTAACTAGGTTTTTTGGTTGGGTA TTTTCTTTCCTTCTTTTCCCTCCATTTTTCTACTATTGACTTGGTTTTTTGTAGGGGTGG AATACTTGTTTGCCTTGTGGTGGTTTTGGGTCATTTGGATCCTTGTGTTTTGTTTGCGTA AACCCGAATTTTTGCTAAAAGGGGTTTTTACCGATTGTCTGGTTTTAGTATG
Species	Pyrus pyrifolia
Publication	[view all]
Contact	Toshiya Yamamoto
Comment	SNP position in sequence: 468

Contact

Name

Details

Toshiya Yamamoto

First name:	Toshiya
Last name:	Yamamoto
Institution:	National Institute of Fruit Tree Science, Graduate School of Life and Environmental Sciences, University of Tsukuba
Address:	National Institute of Fruit Tree Science, 2-1 Fujimoto, Tsukuba, Ibaraki 305-8605, Japan
Country:	Japan
Email:	toshiya@affrc.go.jp
Last update:	Apr 2014

Publications


Year	Publication
2014	Terakami S, Nishitani C, Kunihisa M, Shirasawa K, Sato S, Tabata S, Kurita K, Kanamori H, Katayose Y, Takada N, Saito T, Yamamoto T. Transcriptome-based single nucleotide polymorphism markers for genome mapping in Japanese pear (Pyrus pyrifolia Nakai). Tree genetics & genomes. 2014; 10(4):853-863.

Map Positions


#	Map Name	Linkage Group	Bin	Position	Locus	MapViewer
1	Pear-integrated_consensus_map-IPCG-2017	LG10	N/A	218.43	JPsnpHou00227	View

Sequence

>JPsnpHou00227 ID=JPsnpHou00227; Name=JPsnpHou00227; organism=Pyrus pyrifolia; type=genetic_marker; length=760bp
CGATGGTGGTGCTAAGTAGCTTAGCAGGAGTTGAGGAGGGAAAGGAGGCT
ATTGTGGAGGAAGGCGGGCTGGCAGCGCTTGTGGAGGCGATTGAGGATGG
GTCGGTGAAAGGAAAGGAGTTTGCGGTGTTGACACTGTTGCATCTGTGCA
CTGAGAGTGTGAGGAACAGAGGGTTGCTTGTGAGGGAAGGAGGGATTCCG
CCGTTGGTTGCGCTTTCGCAGACGGGGACTGTTAAAGCTAAGCACAAGGC
TGAAACGCTTCTTGGGTACTTGAGAGAACCGAGACAAGAAGCGTCCTCTT
CGGCTCTTTAGAGGAGCGAAGGGAGGTACTTTCACTACTTAGAGAAGAAG
CTATACTATGTGTCTGTCTCATGTGGTTTGAGTAGCGTTCGGTTGCACTT
GTATATAGGAAGTGTTGGTGTTTTCATGGTTTGTTGTAACTTTGTACAGT
GTGGCTGAGAACTGGGAmGAAGAATATGATATTGTTGTAGGAAGAAGGGA
GAGAGATTAGAGGAAGCTAGTATGCAAGAGACTACTGACTTCTTAGTAGT
TTAGATGTATGAATTTAACTAGGTTTTTTGGTTGGGTATTTTCTTTCCTT
CTTTTCCCTCCATTTTTCTACTATTGACTTGGTTTTTTGTAGGGGTGGAA
TACTTGTTTGCCTTGTGGTGGTTTTGGGTCATTTGGATCCTTGTGTTTTG
TTTGCGTAAACCCGAATTTTTGCTAAAAGGGGTTTTTACCGATTGTCTGG
TTTTAGTATG