JPsnpHou00268, JPsnpHou00268 (genetic_marker) Pyrus pyrifolia

Marker Overview


Name	JPsnpHou00268
dbSNP ID	N/A
Type	SNP
SNP Alleles	A/T
5' Flanking Sequence	GAAACATGGTGGTATGAGGAACAAGACCATCTGAGAAACAACTGGTCTTTGGGGAAAGCT GTTGGAAATTATTCTGGATCTTCGTTTCTTCTTCTTCCAGTATGGTGTTGTGTATCAACT GAACATTACTGGCGGAAATACAAGTATAGCTGTTTACTTGCTATCTTGGATATACATGGT GGTGGCTGTTGGAATCTATATAGTCCTAGCATATGCTCAGGACAAATATGCAGCAAAGGA CCACATTTACTACCGGCTAGTTCAGCTTATTGTCATAATTGCCTTGGTACTCGTAGCCGT GTTGCTGATTGAGTTCACTAAGTTCAACTTTCTTGATTTCATCTCAAGTCTCTTGGCATT CATCCCTACTGGCTACGGTATAATCTTAATAGCTCAAGTACTCAGACCTTTTCTGCAGTC TACGGTGGTGTGGGATACTGTTGTTTCGTTGGCCCGACTGTATGAT
3' Flanking Sequence	TGATTTTCGGAGTGATTGTTATGGCTCCTGTGGCATTGCTGTCATGGTTACCTGGATTTC AGTCAATGCAGACTAGGATCTTGTTCAATGAAGCGTTCAGCCGGGGTCTTCAGATATCTC GTATTCTTACCGGCAAAAAGTTCCAATGAGATGCATTCAGAGGTCACGATTCTTCCATTG GTGAATTCAGCTGCTGATCTGCACTAATCAGCACATCTTTCCTCCTCTTCTGATGCTCCT GTGTTCAATTTGCGAGTCACCGAATTTTTTCGGGCTAGAGATTTTGTAATGAAGCAGGGT AATTCGAGTAATTCGAGTGATTAGTTGTTAAGGATCTGGTTTTGTAAATATTTGTTCATA TCTAGCGTAGCTTCTGTTCTATGCTAGGTAGCTTATTTGCTATTTCCCACCTATCACTTT TTCTATTCCTCTCTCTCTAGTCTCAAGAACAGAATTTATATGCTTTTAGTCACAGAAAAG TACCCCAAATTCAACTAAAAGTCTCATTCTTGATAAACACTTTCATGGACCGGGTTTACC ATCACATGGTGGCCTTTGTTAAATATTTTGTTGCCTTGTGCAAGATTTTTATCCATATGA TGTATTATTGGATCTGGATGTCATGTGACGGTAAACTTGTTTCGTATAAGTTGCTCTCCT CATTCTTTGGTCGAGAAAGCGAACGGCCTTTGAGAAAACATTAAGTTAAAAAAAAAAAAA C
Species	Pyrus pyrifolia
Publication	[view all]
Contact	Toshiya Yamamoto
Comment	SNP position in sequence: 467

Contact

Name

Details

Toshiya Yamamoto

First name:	Toshiya
Last name:	Yamamoto
Institution:	National Institute of Fruit Tree Science, Graduate School of Life and Environmental Sciences, University of Tsukuba
Address:	National Institute of Fruit Tree Science, 2-1 Fujimoto, Tsukuba, Ibaraki 305-8605, Japan
Country:	Japan
Email:	toshiya@affrc.go.jp
Last update:	Apr 2014

Publications


Year	Publication
2014	Terakami S, Nishitani C, Kunihisa M, Shirasawa K, Sato S, Tabata S, Kurita K, Kanamori H, Katayose Y, Takada N, Saito T, Yamamoto T. Transcriptome-based single nucleotide polymorphism markers for genome mapping in Japanese pear (Pyrus pyrifolia Nakai). Tree genetics & genomes. 2014; 10(4):853-863.

Map Positions


#	Map Name	Linkage Group	Bin	Position	Locus	MapViewer
1	Pear-integrated_consensus_map-IPCG-2017	LG10	N/A	197.35	JPsnpHou00268	View

Sequence

>JPsnpHou00268 ID=JPsnpHou00268; Name=JPsnpHou00268; organism=Pyrus pyrifolia; type=genetic_marker; length=1188bp
GAAACATGGTGGTATGAGGAACAAGACCATCTGAGAAACAACTGGTCTTT
GGGGAAAGCTGTTGGAAATTATTCTGGATCTTCGTTTCTTCTTCTTCCAG
TATGGTGTTGTGTATCAACTGAACATTACTGGCGGAAATACAAGTATAGC
TGTTTACTTGCTATCTTGGATATACATGGTGGTGGCTGTTGGAATCTATA
TAGTCCTAGCATATGCTCAGGACAAATATGCAGCAAAGGACCACATTTAC
TACCGGCTAGTTCAGCTTATTGTCATAATTGCCTTGGTACTCGTAGCCGT
GTTGCTGATTGAGTTCACTAAGTTCAACTTTCTTGATTTCATCTCAAGTC
TCTTGGCATTCATCCCTACTGGCTACGGTATAATCTTAATAGCTCAAGTA
CTCAGACCTTTTCTGCAGTCTACGGTGGTGTGGGATACTGTTGTTTCGTT
GGCCCGACTGTATGATwTGATTTTCGGAGTGATTGTTATGGCTCCTGTGG
CATTGCTGTCATGGTTACCTGGATTTCAGTCAATGCAGACTAGGATCTTG
TTCAATGAAGCGTTCAGCCGGGGTCTTCAGATATCTCGTATTCTTACCGG
CAAAAAGTTCCAATGAGATGCATTCAGAGGTCACGATTCTTCCATTGGTG
AATTCAGCTGCTGATCTGCACTAATCAGCACATCTTTCCTCCTCTTCTGA
TGCTCCTGTGTTCAATTTGCGAGTCACCGAATTTTTTCGGGCTAGAGATT
TTGTAATGAAGCAGGGTAATTCGAGTAATTCGAGTGATTAGTTGTTAAGG
ATCTGGTTTTGTAAATATTTGTTCATATCTAGCGTAGCTTCTGTTCTATG
CTAGGTAGCTTATTTGCTATTTCCCACCTATCACTTTTTCTATTCCTCTC
TCTCTAGTCTCAAGAACAGAATTTATATGCTTTTAGTCACAGAAAAGTAC
CCCAAATTCAACTAAAAGTCTCATTCTTGATAAACACTTTCATGGACCGG
GTTTACCATCACATGGTGGCCTTTGTTAAATATTTTGTTGCCTTGTGCAA
GATTTTTATCCATATGATGTATTATTGGATCTGGATGTCATGTGACGGTA
AACTTGTTTCGTATAAGTTGCTCTCCTCATTCTTTGGTCGAGAAAGCGAA
CGGCCTTTGAGAAAACATTAAGTTAAAAAAAAAAAAAC