JPsnpHou00504, JPsnpHou00504 (genetic_marker) Pyrus pyrifolia

Marker Overview


Name	JPsnpHou00504
dbSNP ID	N/A
Type	SNP
SNP Alleles	T/C
5' Flanking Sequence	CTGAAGGTGGAGGTGAGGATGAGGGTGTTGATGATCAAGCCGTCAAGGTTGTTGACATTG TTGACACATTTAGACTTCAGGAGCAACCTCCATACGACAAGAAGCAGTTTGTCACATGGG TGAAGAGGTATATCAAACTGTTGACACCCAAGTTGGAGGGGGAGAGCCAAGAGGTGTTCA AGAAGAACATTGAGGCAGCAACCAAGTTTCTGATTGGGAAGCTCAGCGACCTCCAATTCT TTGTTGGGGAGAGCATGCATGATGATGGCGGTTTGGTCTTTGCCTACTACAAGGAGGGTG CGACCGACCCAACATTTATCTACTTCGCTCATGGTTTGAAGGAGGTCAAGTGCTAAGCAA TTGGCAGAGAAAGTTCAGAATGCATGTTGTAATCCTAGTCTATATTATTGCTTTCTTTAC TTTCTATGTTTAAAATTGGGGGATGAAGTCTATTTTTGTGCTTTG
3' Flanking Sequence	TTTGTTAGAATATTGCGCGTTTGTTGACTCGGCTTTATGCCTATCTTGGTTTTAATGGTC TTTCGACTTGGATTTCTTATTTATGTGGTTCTAAATTTTGATTGAGAAATAACATTGTGT TCTACATTTTAACAAAAAACCGAGACTGCCAAGGCACACAGGGGATAGG
Species	Pyrus pyrifolia
Publication	[view all]
Contact	Toshiya Yamamoto
Comment	SNP position in sequence: 466

Contact

Name

Details

Toshiya Yamamoto

First name:	Toshiya
Last name:	Yamamoto
Institution:	National Institute of Fruit Tree Science, Graduate School of Life and Environmental Sciences, University of Tsukuba
Address:	National Institute of Fruit Tree Science, 2-1 Fujimoto, Tsukuba, Ibaraki 305-8605, Japan
Country:	Japan
Email:	toshiya@affrc.go.jp
Last update:	Apr 2014

Publications


Year	Publication
2014	Terakami S, Nishitani C, Kunihisa M, Shirasawa K, Sato S, Tabata S, Kurita K, Kanamori H, Katayose Y, Takada N, Saito T, Yamamoto T. Transcriptome-based single nucleotide polymorphism markers for genome mapping in Japanese pear (Pyrus pyrifolia Nakai). Tree genetics & genomes. 2014; 10(4):853-863.

Map Positions


#	Map Name	Linkage Group	Bin	Position	Locus	MapViewer
1	Pear-integrated_consensus_map-IPCG-2017	LG13	N/A	92.64	JPsnpHou00504	View

Sequence

>JPsnpHou00504 ID=JPsnpHou00504; Name=JPsnpHou00504; organism=Pyrus pyrifolia; type=genetic_marker; length=635bp
CTGAAGGTGGAGGTGAGGATGAGGGTGTTGATGATCAAGCCGTCAAGGTT
GTTGACATTGTTGACACATTTAGACTTCAGGAGCAACCTCCATACGACAA
GAAGCAGTTTGTCACATGGGTGAAGAGGTATATCAAACTGTTGACACCCA
AGTTGGAGGGGGAGAGCCAAGAGGTGTTCAAGAAGAACATTGAGGCAGCA
ACCAAGTTTCTGATTGGGAAGCTCAGCGACCTCCAATTCTTTGTTGGGGA
GAGCATGCATGATGATGGCGGTTTGGTCTTTGCCTACTACAAGGAGGGTG
CGACCGACCCAACATTTATCTACTTCGCTCATGGTTTGAAGGAGGTCAAG
TGCTAAGCAATTGGCAGAGAAAGTTCAGAATGCATGTTGTAATCCTAGTC
TATATTATTGCTTTCTTTACTTTCTATGTTTAAAATTGGGGGATGAAGTC
TATTTTTGTGCTTTGyTTTGTTAGAATATTGCGCGTTTGTTGACTCGGCT
TTATGCCTATCTTGGTTTTAATGGTCTTTCGACTTGGATTTCTTATTTAT
GTGGTTCTAAATTTTGATTGAGAAATAACATTGTGTTCTACATTTTAACA
AAAAACCGAGACTGCCAAGGCACACAGGGGATAGG