JPsnpHou00250, JPsnpHou00250 (genetic_marker) Pyrus pyrifolia

Marker Overview


Name	JPsnpHou00250
dbSNP ID	N/A
Type	SNP
SNP Alleles	A/C
5' Flanking Sequence	GTGTGAGTGAAAAGCCTGAGGTGTTTGCAGTTTCCATGGAACCTAATTTTGCATCCTATC TGCACAACGAATTTCTGCCGGTTTATCCTGGAAAAAAGGAGCCGCATGGGATTACCCTTC AGAGAAACAAGCGCAAATATGCAGGGCAAGATGAATCCTCTGCCTTTTGCAAGGCCATGG ACGGTGTTCACTTAGTCAATGGTTTGGAGTGCAAGATAGCTTGCAATTCATCCAAGATCT CTTACGTTCTTGACACAGAAGATTACTTCTTCCGTATGAGAAGGAAAAGGAGAACATCTG AGGCCAGATCACCATATTGTGATCAGACGAGAGTACAGCGGTTCCACAAATTCTTATCAA TCTCATCATAGCTTAGAAGGAAAATCGTTTGACATTGGGAAGCTAAAGGAGTCATCTACT CGATTTCTGAGACTGGAGAAGGATGATGGCGGGCCTGGACACGT
3' Flanking Sequence	GAGCATGTCTGGTTCAGAAGATTGGCCTCCGAGCCATTGTTGTGTATATAAGGTTGGTGT ATGATAATTTCGTAGAAAGGTATTTAAGTTAAAGTTCTTAATCTTTGTCATAGATAGGAT ATTTTCTTCCCCACTTCCATAAGCACACTGTGTAAGTGTAACAAATTGATCAAATAGCAG AAAAGCACGCGAGTTTTAACAAATCCCGAGC
Species	Pyrus pyrifolia
Publication	[view all]
Contact	Toshiya Yamamoto
Comment	SNP position in sequence: 465

Contact

Name

Details

Toshiya Yamamoto

First name:	Toshiya
Last name:	Yamamoto
Institution:	National Institute of Fruit Tree Science, Graduate School of Life and Environmental Sciences, University of Tsukuba
Address:	National Institute of Fruit Tree Science, 2-1 Fujimoto, Tsukuba, Ibaraki 305-8605, Japan
Country:	Japan
Email:	toshiya@affrc.go.jp
Last update:	Apr 2014

Publications


Year	Publication
2014	Terakami S, Nishitani C, Kunihisa M, Shirasawa K, Sato S, Tabata S, Kurita K, Kanamori H, Katayose Y, Takada N, Saito T, Yamamoto T. Transcriptome-based single nucleotide polymorphism markers for genome mapping in Japanese pear (Pyrus pyrifolia Nakai). Tree genetics & genomes. 2014; 10(4):853-863.

Map Positions


#	Map Name	Linkage Group	Bin	Position	Locus	MapViewer
1	Pear-integrated_consensus_map-IPCG-2017	LG9	N/A	26.34	JPsnpHou00250	View

Sequence

>JPsnpHou00250 ID=JPsnpHou00250; Name=JPsnpHou00250; organism=Pyrus pyrifolia; type=genetic_marker; length=676bp
GTGTGAGTGAAAAGCCTGAGGTGTTTGCAGTTTCCATGGAACCTAATTTT
GCATCCTATCTGCACAACGAATTTCTGCCGGTTTATCCTGGAAAAAAGGA
GCCGCATGGGATTACCCTTCAGAGAAACAAGCGCAAATATGCAGGGCAAG
ATGAATCCTCTGCCTTTTGCAAGGCCATGGACGGTGTTCACTTAGTCAAT
GGTTTGGAGTGCAAGATAGCTTGCAATTCATCCAAGATCTCTTACGTTCT
TGACACAGAAGATTACTTCTTCCGTATGAGAAGGAAAAGGAGAACATCTG
AGGCCAGATCACCATATTGTGATCAGACGAGAGTACAGCGGTTCCACAAA
TTCTTATCAATCTCATCATAGCTTAGAAGGAAAATCGTTTGACATTGGGA
AGCTAAAGGAGTCATCTACTCGATTTCTGAGACTGGAGAAGGATGATGGC
GGGCCTGGACACGTmGAGCATGTCTGGTTCAGAAGATTGGCCTCCGAGCC
ATTGTTGTGTATATAAGGTTGGTGTATGATAATTTCGTAGAAAGGTATTT
AAGTTAAAGTTCTTAATCTTTGTCATAGATAGGATATTTTCTTCCCCACT
TCCATAAGCACACTGTGTAAGTGTAACAAATTGATCAAATAGCAGAAAAG
CACGCGAGTTTTAACAAATCCCGAGC