JPsnpHou00643, JPsnpHou00643 (genetic_marker) Pyrus pyrifolia

Marker Overview


Name	JPsnpHou00643
dbSNP ID	N/A
Type	SNP
SNP Alleles	T/C
5' Flanking Sequence	GGAAAATGGACTTGGATTTCATGTTCCACATGTTCTTTCTTGCTCGGTACTGCAAGCTTC TTGAAGAGAACTCTTTTCGAGGACGGACTGCGGATTTCTTTTATATGCTCTTATTTGGTG CCACTATGTTGACTGGGATAGTTCTGGTTGGAGGGATGATACCTCATTTGTCTGAGTCGT TTGCAAAGATTATATTCCTCAGCAACTCACTAACGTTCATGATGGTCTATGTGTGGAGCA AGCAAAATCCTTTCATTCATATGAGCTTCTTGGGCCTCTTTACCTTCACAGCAGCTTACC TACCTTGGGTTCTTCTGACnTTCTCCGTCTTGGTnGGAGCTAGCCCTTGGGTGGATCTTT TGGGAATGATTGCCGGTCATGCCTATTACTTTCTAGAAGATGTTTACCCACGAATGACAG GTCGCCGGCCCTTGAGAACCCCTTCACTTATCAAAGCACTATT
3' Flanking Sequence	GCCGATGACCCTGTTGTGGTGGCACGACCAAATGTGAGATTTGCACCACCACCCGTGGAG GAACTTCACCAAGATTAATCAGATGTCGAGGAAAGCCAGGTTGATGAGGGTTATAGCTTT TGGTATATTTATCTGGCATTTAGGATGGATTTTCGGCTTTGTAATATATAGAAAGATGTT CACTGATATGTATTGTTTTTGAGCGGT
Species	Pyrus pyrifolia
Publication	[view all]
Contact	Toshiya Yamamoto
Comment	SNP position in sequence: 464

Contact

Name

Details

Toshiya Yamamoto

First name:	Toshiya
Last name:	Yamamoto
Institution:	National Institute of Fruit Tree Science, Graduate School of Life and Environmental Sciences, University of Tsukuba
Address:	National Institute of Fruit Tree Science, 2-1 Fujimoto, Tsukuba, Ibaraki 305-8605, Japan
Country:	Japan
Email:	toshiya@affrc.go.jp
Last update:	Apr 2014

Publications


Year	Publication
2014	Terakami S, Nishitani C, Kunihisa M, Shirasawa K, Sato S, Tabata S, Kurita K, Kanamori H, Katayose Y, Takada N, Saito T, Yamamoto T. Transcriptome-based single nucleotide polymorphism markers for genome mapping in Japanese pear (Pyrus pyrifolia Nakai). Tree genetics & genomes. 2014; 10(4):853-863.

Map Positions


#	Map Name	Linkage Group	Bin	Position	Locus	MapViewer
1	Pear-integrated_consensus_map-IPCG-2017	LG10	N/A	208.8	JPsnpHou00643	View

Sequence

>JPsnpHou00643 ID=JPsnpHou00643; Name=JPsnpHou00643; organism=Pyrus pyrifolia; type=genetic_marker; length=671bp
GGAAAATGGACTTGGATTTCATGTTCCACATGTTCTTTCTTGCTCGGTAC
TGCAAGCTTCTTGAAGAGAACTCTTTTCGAGGACGGACTGCGGATTTCTT
TTATATGCTCTTATTTGGTGCCACTATGTTGACTGGGATAGTTCTGGTTG
GAGGGATGATACCTCATTTGTCTGAGTCGTTTGCAAAGATTATATTCCTC
AGCAACTCACTAACGTTCATGATGGTCTATGTGTGGAGCAAGCAAAATCC
TTTCATTCATATGAGCTTCTTGGGCCTCTTTACCTTCACAGCAGCTTACC
TACCTTGGGTTCTTCTGACnTTCTCCGTCTTGGTnGGAGCTAGCCCTTGG
GTGGATCTTTTGGGAATGATTGCCGGTCATGCCTATTACTTTCTAGAAGA
TGTTTACCCACGAATGACAGGTCGCCGGCCCTTGAGAACCCCTTCACTTA
TCAAAGCACTATTyGCCGATGACCCTGTTGTGGTGGCACGACCAAATGTG
AGATTTGCACCACCACCCGTGGAGGAACTTCACCAAGATTAATCAGATGT
CGAGGAAAGCCAGGTTGATGAGGGTTATAGCTTTTGGTATATTTATCTGG
CATTTAGGATGGATTTTCGGCTTTGTAATATATAGAAAGATGTTCACTGA
TATGTATTGTTTTTGAGCGGT