JPsnpHou00656, JPsnpHou00656 (genetic_marker) Pyrus pyrifolia

Marker Overview


Name	JPsnpHou00656
dbSNP ID	N/A
Type	SNP
SNP Alleles	A/G
5' Flanking Sequence	TGGGGTTCTTCTTTCGAACTTGGGCATTAGTTCAGCTTCTGCATCTCTGCTTATCAGTGC AGTAACAACCTTGCTGATGCTTCCTAGCATAGCCATTGCCATGAGGCTCATGGATTTAGC CGGCAGAAGGAGTTTGCTGCTCGGCACAATCCCTGTCCTGATAGTGTCTCTGGTCATCCT AGTCCTCGGAGGTCTTGTGAATATGGGAAGTGTTGTAAATGCATCAGTTTCAACTGTCAG CGTTGTGCTCTACTTCTGTTTCTTTGTTATGGGGTTTGGTCCGATCCCCAACATACTCTG TGCAGAAATCTTTCCCACCAGAGTTCGAGGCCTCTGCATTGCCATCTGCGCCCTCACATT CTGGATTGGTGATATCATTGTCACCTACTCACTTCCGGTGATGCTCAAATCTGTTGGCCT TGCTGGTGTTTTTGGCATGTACGCAGTTGTGTGCGTCATAGC
3' Flanking Sequence	TTTATCTTTGTTTTCTTGAAAGTTCCCGAGACCAAAGGCATGCCCCTTGAAGTGATTACC GAGTTTTTCTCTGTTGGTGCAAAGCAGGCTGCAGCTGCCAAGAACAATTAACTTGATCCA TAGTGGGTTAAAAGTTTTGAAAGCTGTTTAATCTTCCTAGTTTTGCATCGAATCTACATT TTCTTTACTTGTTTTGGAATTGGTACGATTGATCCTTACGGAAGGGGTTATTGTATAATT ATCCCCCATTTGTTATACCTGATTAAAATGACTAGAGTTCAATGTAC
Species	Pyrus pyrifolia
Publication	[view all]
Contact	Toshiya Yamamoto
Comment	SNP position in sequence: 463

Contact

Name

Details

Toshiya Yamamoto

First name:	Toshiya
Last name:	Yamamoto
Institution:	National Institute of Fruit Tree Science, Graduate School of Life and Environmental Sciences, University of Tsukuba
Address:	National Institute of Fruit Tree Science, 2-1 Fujimoto, Tsukuba, Ibaraki 305-8605, Japan
Country:	Japan
Email:	toshiya@affrc.go.jp
Last update:	Apr 2014

Publications


Year	Publication
2014	Terakami S, Nishitani C, Kunihisa M, Shirasawa K, Sato S, Tabata S, Kurita K, Kanamori H, Katayose Y, Takada N, Saito T, Yamamoto T. Transcriptome-based single nucleotide polymorphism markers for genome mapping in Japanese pear (Pyrus pyrifolia Nakai). Tree genetics & genomes. 2014; 10(4):853-863.

Map Positions


#	Map Name	Linkage Group	Bin	Position	Locus	MapViewer
1	Pear-integrated_consensus_map-IPCG-2017	LG5	N/A	69.58	JPsnpHou00656	View

Sequence

>JPsnpHou00656 ID=JPsnpHou00656; Name=JPsnpHou00656; organism=Pyrus pyrifolia; type=genetic_marker; length=750bp
TGGGGTTCTTCTTTCGAACTTGGGCATTAGTTCAGCTTCTGCATCTCTGC
TTATCAGTGCAGTAACAACCTTGCTGATGCTTCCTAGCATAGCCATTGCC
ATGAGGCTCATGGATTTAGCCGGCAGAAGGAGTTTGCTGCTCGGCACAAT
CCCTGTCCTGATAGTGTCTCTGGTCATCCTAGTCCTCGGAGGTCTTGTGA
ATATGGGAAGTGTTGTAAATGCATCAGTTTCAACTGTCAGCGTTGTGCTC
TACTTCTGTTTCTTTGTTATGGGGTTTGGTCCGATCCCCAACATACTCTG
TGCAGAAATCTTTCCCACCAGAGTTCGAGGCCTCTGCATTGCCATCTGCG
CCCTCACATTCTGGATTGGTGATATCATTGTCACCTACTCACTTCCGGTG
ATGCTCAAATCTGTTGGCCTTGCTGGTGTTTTTGGCATGTACGCAGTTGT
GTGCGTCATAGCrTTTATCTTTGTTTTCTTGAAAGTTCCCGAGACCAAAG
GCATGCCCCTTGAAGTGATTACCGAGTTTTTCTCTGTTGGTGCAAAGCAG
GCTGCAGCTGCCAAGAACAATTAACTTGATCCATAGTGGGTTAAAAGTTT
TGAAAGCTGTTTAATCTTCCTAGTTTTGCATCGAATCTACATTTTCTTTA
CTTGTTTTGGAATTGGTACGATTGATCCTTACGGAAGGGGTTATTGTATA
ATTATCCCCCATTTGTTATACCTGATTAAAATGACTAGAGTTCAATGTAC