JPsnpHou00518, JPsnpHou00518 (genetic_marker) Pyrus pyrifolia

Marker Overview


Name	JPsnpHou00518
dbSNP ID	N/A
Type	SNP
SNP Alleles	T/C
5' Flanking Sequence	GTTGGATTCAGGAAGCCAGCACTTGAGGATCCAGTGAAGACAAACAAAATCCCAAGACAG ATCCCAGAACAAGCCTGGTACATGAACCCAATTTTCTCGATTCTAATTGGAGGGATCCTC CCATTCGGAGCAGTTTTCATCGAACTATTCTTCATCCTGACTTCGATCTGGCTGAACCAG TTCTACTACATCTTCGGTTTCCTCTTCTTGGTCTTCATCATCCTCATCATCACATGCGCT GAGATCACCATCGTCCTCTGCTACTTCCAGTTGTGCAGCGAAGATTACTTGTGGTGGTGG AGATCATACCTCACATCGGGCTCATCGGCTCTGTACCTCTTCCTCTACGCCACATTCTAC TTCTTCACAAAGCTCGAAATCTCAAAGCTGGTGTCGGCCCTCTTATACTTTGGATACATG CTCATTGCATCTTATGCATTCTTTGTTGTCAC
3' Flanking Sequence	GGAACCATTGGCTTCTACGCCTGCTTTTGGTTCACGAGGCTCATCTACTCATCGGTGAAG ATCGACTAGACAAATAAACTCAAAACTGGGGCTCGGCAAGGTGTGATATCTCCTCTTCCT CTCCCCCTTCCCCAGAAGATGCAAACAGATGGTAATATCTCTTCAAGTAGTGTAAGATTT TGCAATTAACTTTGGATTCTTGTGCTGTCGAAAATGTATCCTATTTGTGCTCAATTTTGA ACCATGACAAAAAGCCGACAAGGTCATATTTTCTTATATTTCTATTTGTTTATTTTCAGA AAAAAAAAAAAAC
Species	Pyrus pyrifolia
Publication	[view all]
Contact	Toshiya Yamamoto
Comment	SNP position in sequence: 453

Contact

Name

Details

Toshiya Yamamoto

First name:	Toshiya
Last name:	Yamamoto
Institution:	National Institute of Fruit Tree Science, Graduate School of Life and Environmental Sciences, University of Tsukuba
Address:	National Institute of Fruit Tree Science, 2-1 Fujimoto, Tsukuba, Ibaraki 305-8605, Japan
Country:	Japan
Email:	toshiya@affrc.go.jp
Last update:	Apr 2014

Publications


Year	Publication
2014	Terakami S, Nishitani C, Kunihisa M, Shirasawa K, Sato S, Tabata S, Kurita K, Kanamori H, Katayose Y, Takada N, Saito T, Yamamoto T. Transcriptome-based single nucleotide polymorphism markers for genome mapping in Japanese pear (Pyrus pyrifolia Nakai). Tree genetics & genomes. 2014; 10(4):853-863.

Map Positions


#	Map Name	Linkage Group	Bin	Position	Locus	MapViewer
1	Pear-integrated_consensus_map-IPCG-2017	LG15	N/A	3.9	JPsnpHou00518	View

Sequence

>JPsnpHou00518 ID=JPsnpHou00518; Name=JPsnpHou00518; organism=Pyrus pyrifolia; type=genetic_marker; length=766bp
GTTGGATTCAGGAAGCCAGCACTTGAGGATCCAGTGAAGACAAACAAAAT
CCCAAGACAGATCCCAGAACAAGCCTGGTACATGAACCCAATTTTCTCGA
TTCTAATTGGAGGGATCCTCCCATTCGGAGCAGTTTTCATCGAACTATTC
TTCATCCTGACTTCGATCTGGCTGAACCAGTTCTACTACATCTTCGGTTT
CCTCTTCTTGGTCTTCATCATCCTCATCATCACATGCGCTGAGATCACCA
TCGTCCTCTGCTACTTCCAGTTGTGCAGCGAAGATTACTTGTGGTGGTGG
AGATCATACCTCACATCGGGCTCATCGGCTCTGTACCTCTTCCTCTACGC
CACATTCTACTTCTTCACAAAGCTCGAAATCTCAAAGCTGGTGTCGGCCC
TCTTATACTTTGGATACATGCTCATTGCATCTTATGCATTCTTTGTTGTC
ACyGGAACCATTGGCTTCTACGCCTGCTTTTGGTTCACGAGGCTCATCTA
CTCATCGGTGAAGATCGACTAGACAAATAAACTCAAAACTGGGGCTCGGC
AAGGTGTGATATCTCCTCTTCCTCTCCCCCTTCCCCAGAAGATGCAAACA
GATGGTAATATCTCTTCAAGTAGTGTAAGATTTTGCAATTAACTTTGGAT
TCTTGTGCTGTCGAAAATGTATCCTATTTGTGCTCAATTTTGAACCATGA
CAAAAAGCCGACAAGGTCATATTTTCTTATATTTCTATTTGTTTATTTTC
AGAAAAAAAAAAAAAC