JPsnpHou00485, JPsnpHou00485 (genetic_marker) Pyrus pyrifolia

Marker Overview


Name	JPsnpHou00485
dbSNP ID	N/A
Type	SNP
SNP Alleles	T/G
5' Flanking Sequence	GTTTCAACATAGTCGGAGCTTTCAGAGGGTTGTCTCTCCGCCCAACATCCACCTCCAGCT CGTCGTCCTCCTCCTTCTTCAGAGGCGATTTGGATTCTCTGCAACTGGGTCCCAAGCAGT CGTTAGCGTCGTCGGGCCCACAGAGACTTCCATTGACGATTCAAAACGCGCACAAGAAAG GAGCTGGGAGTACCAAGAACGGACGTGATTCCAAAGGCCAGAGGCTCGGCGTCAAGATTT ACGGCGACCAGGTCGCCAAGGCTGGCTCCATCATTGTCCGCCAGCGTGGCACCAAGTTCC ATGCGGGGAAGAATGTGGGGCTCGGCAAGGACCACACCATATTCTCTTTGATTGATGGCA TGGTTAAATTTGAGAAGTTTGGACCCGACAAGAAGAAGATTAGTGTTTACCCTCGAGAAG TCCAGCCGGAGAACCCCAACAGCTACCG
3' Flanking Sequence	GTTAAAAAGAGGGAGAACTTCAGGCTACAGCGTGAACGTAAGAAAGCGAGAAAGGAAGGC TACATCCTTCAAAACAAACCTGAGCTACTACTTGCTTCTGCTGATGCTGCAGATGCCAAT CCAGTTTGTTAATTTCTCGATTCTATGTTGAGCAATCTTGCAGTTGCGTTTGCCTTGCTT TTCCTGTTCCCTTTTGTAAAATTTTACAAGAACACTTTCACCGGAAATCTCAAGTCATGT ATTGAGTTT
Species	Pyrus pyrifolia
Publication	[view all]
Contact	Toshiya Yamamoto
Comment	SNP position in sequence: 449

Contact

Name

Details

Toshiya Yamamoto

First name:	Toshiya
Last name:	Yamamoto
Institution:	National Institute of Fruit Tree Science, Graduate School of Life and Environmental Sciences, University of Tsukuba
Address:	National Institute of Fruit Tree Science, 2-1 Fujimoto, Tsukuba, Ibaraki 305-8605, Japan
Country:	Japan
Email:	toshiya@affrc.go.jp
Last update:	Apr 2014

Publications


Year	Publication
2014	Terakami S, Nishitani C, Kunihisa M, Shirasawa K, Sato S, Tabata S, Kurita K, Kanamori H, Katayose Y, Takada N, Saito T, Yamamoto T. Transcriptome-based single nucleotide polymorphism markers for genome mapping in Japanese pear (Pyrus pyrifolia Nakai). Tree genetics & genomes. 2014; 10(4):853-863.

Map Positions


#	Map Name	Linkage Group	Bin	Position	Locus	MapViewer
1	Pear-integrated_consensus_map-IPCG-2017	LG17	N/A	40.01	JPsnpHou00485	View

Sequence

>JPsnpHou00485 ID=JPsnpHou00485; Name=JPsnpHou00485; organism=Pyrus pyrifolia; type=genetic_marker; length=698bp
GTTTCAACATAGTCGGAGCTTTCAGAGGGTTGTCTCTCCGCCCAACATCC
ACCTCCAGCTCGTCGTCCTCCTCCTTCTTCAGAGGCGATTTGGATTCTCT
GCAACTGGGTCCCAAGCAGTCGTTAGCGTCGTCGGGCCCACAGAGACTTC
CATTGACGATTCAAAACGCGCACAAGAAAGGAGCTGGGAGTACCAAGAAC
GGACGTGATTCCAAAGGCCAGAGGCTCGGCGTCAAGATTTACGGCGACCA
GGTCGCCAAGGCTGGCTCCATCATTGTCCGCCAGCGTGGCACCAAGTTCC
ATGCGGGGAAGAATGTGGGGCTCGGCAAGGACCACACCATATTCTCTTTG
ATTGATGGCATGGTTAAATTTGAGAAGTTTGGACCCGACAAGAAGAAGAT
TAGTGTTTACCCTCGAGAAGTCCAGCCGGAGAACCCCAACAGCTACCGkG
TTAAAAAGAGGGAGAACTTCAGGCTACAGCGTGAACGTAAGAAAGCGAGA
AAGGAAGGCTACATCCTTCAAAACAAACCTGAGCTACTACTTGCTTCTGC
TGATGCTGCAGATGCCAATCCAGTTTGTTAATTTCTCGATTCTATGTTGA
GCAATCTTGCAGTTGCGTTTGCCTTGCTTTTCCTGTTCCCTTTTGTAAAA
TTTTACAAGAACACTTTCACCGGAAATCTCAAGTCATGTATTGAGTTT