JPsnpHou00644, JPsnpHou00644 (genetic_marker) Pyrus pyrifolia

Marker Overview


Name	JPsnpHou00644
dbSNP ID	N/A
Type	SNP
SNP Alleles	A/G
5' Flanking Sequence	AGCACTTATTCGTGAGGTCATAAAATATGCCTCAAGTATTCCAACCTGCCGAGCAATTTA CTTGCATGTCATTTCTTACAATAATTCTGCAATCCATTTGTACAAAAAAATGTCATTCAT GTGTGTAAGAAGGTTGCAAGGCTTTTACTTGATCAATGGTCAGCATTATGATTCATATCT GTTTGTGTACTATGTAAATGGTGGCCGATCTCCTTGTTCACCATTGGAACTGATTACAGG AACACTGAACTGTATGAGGAATGGTCTTAAGTCTCTGCTTGCAATGCTACGGAAGAACGA TGACAGGAAGGTGTCAAAGTGGGCGAAATGTAAAGAAACTCATAGCCATATATCGATCAC ACAAAACAGGAGAAACCTGACTGCAGCGGAGTGTACAGGGTATGAGTGTGTTTGATTTGT TTGTTCATGTTAGAGGTTGGATCAAC
3' Flanking Sequence	GATGGCGATGAGCAATGAGTGAGCAGGAGGGGAAGTTATGTTGATGCAAAGTTATAAACG CTGCTTTCTACCATGCATTCAGGTTTAACCATACCAATATACATTTACATTTACCGCGGA ATAACATGTCAATGTAATAAGCGTTGTAGTGTTGTTGTGTTGTACTTGGATTGGATGAAG TTAAAGATAACAAGCAGGGTGTCACTTGTGAGATCCTTGATTACTTGTTCATATGTTCCT TTTAATCTGTAAGTTATTCTCAACCT
Species	Pyrus pyrifolia
Publication	[view all]
Contact	Toshiya Yamamoto
Comment	SNP position in sequence: 447

Contact

Name

Details

Toshiya Yamamoto

First name:	Toshiya
Last name:	Yamamoto
Institution:	National Institute of Fruit Tree Science, Graduate School of Life and Environmental Sciences, University of Tsukuba
Address:	National Institute of Fruit Tree Science, 2-1 Fujimoto, Tsukuba, Ibaraki 305-8605, Japan
Country:	Japan
Email:	toshiya@affrc.go.jp
Last update:	Apr 2014

Publications


Year	Publication
2014	Terakami S, Nishitani C, Kunihisa M, Shirasawa K, Sato S, Tabata S, Kurita K, Kanamori H, Katayose Y, Takada N, Saito T, Yamamoto T. Transcriptome-based single nucleotide polymorphism markers for genome mapping in Japanese pear (Pyrus pyrifolia Nakai). Tree genetics & genomes. 2014; 10(4):853-863.

Map Positions


#	Map Name	Linkage Group	Bin	Position	Locus	MapViewer
1	Pear-integrated_consensus_map-IPCG-2017	LG7	N/A	94.08	JPsnpHou00644	View

Sequence

>JPsnpHou00644 ID=JPsnpHou00644; Name=JPsnpHou00644; organism=Pyrus pyrifolia; type=genetic_marker; length=713bp
AGCACTTATTCGTGAGGTCATAAAATATGCCTCAAGTATTCCAACCTGCC
GAGCAATTTACTTGCATGTCATTTCTTACAATAATTCTGCAATCCATTTG
TACAAAAAAATGTCATTCATGTGTGTAAGAAGGTTGCAAGGCTTTTACTT
GATCAATGGTCAGCATTATGATTCATATCTGTTTGTGTACTATGTAAATG
GTGGCCGATCTCCTTGTTCACCATTGGAACTGATTACAGGAACACTGAAC
TGTATGAGGAATGGTCTTAAGTCTCTGCTTGCAATGCTACGGAAGAACGA
TGACAGGAAGGTGTCAAAGTGGGCGAAATGTAAAGAAACTCATAGCCATA
TATCGATCACACAAAACAGGAGAAACCTGACTGCAGCGGAGTGTACAGGG
TATGAGTGTGTTTGATTTGTTTGTTCATGTTAGAGGTTGGATCAACrGAT
GGCGATGAGCAATGAGTGAGCAGGAGGGGAAGTTATGTTGATGCAAAGTT
ATAAACGCTGCTTTCTACCATGCATTCAGGTTTAACCATACCAATATACA
TTTACATTTACCGCGGAATAACATGTCAATGTAATAAGCGTTGTAGTGTT
GTTGTGTTGTACTTGGATTGGATGAAGTTAAAGATAACAAGCAGGGTGTC
ACTTGTGAGATCCTTGATTACTTGTTCATATGTTCCTTTTAATCTGTAAG
TTATTCTCAACCT