JPsnpHou00300, JPsnpHou00300 (genetic_marker) Pyrus pyrifolia

Marker Overview


Name	JPsnpHou00300
dbSNP ID	N/A
Type	SNP
SNP Alleles	A/G
5' Flanking Sequence	GGAAAGCAACTTGCATACATTGTCCGAGGAGACACCAAAGTCAAGACTTCCAAGAGGTTC AAGAATGCTGCCGGAGTATCTGTGACATTCTTGGGTGAAAATGTGTCCACTGGATTCAAA CTTGAACAGGAGTATGCCGTTGGCAAGCGCCTGCTATTGGTGGGTACTACTGGTACTGTC CGATCTCAGGGCGACTCAGCATATGGAGCAAATTTGGAGGTGCGGCTAAGGGAAGCAGAT TTTCCGATCGGCCAGGATCAATCCTCATTGGGTCTGTCTCTAGTGCGGTGGAGGGGCGAC TTGGCCCTGGGGGCAAATCTCCAGTCCCAGTTTTCCCTCGGGCGCAACTACAAGATGGCT GTTCGTGCAGGGTTGAACAACAAGCGCAGCGGACAGATCTCGATCAGAACAAGCAGCTCC GAACAACTCCAACTCGC
3' Flanking Sequence	CTCATTGCTGTGATTCCGGTTGTCAAGGCTATCTACAACAGCATCTGGCCCAGAGCCAGT GAGAACTACTCCATCTACTAAGATACGTTCTATTCATTTTGTCATCTGTTTCCATTCTGT TATATTTACGGCGTCGATGTTTTGATATTTTGTCGAATAAAGTTGAGATTGCGCGATTAG TTAGTATCGAAAACGAGATGGAACTTAGAGAGCGAGTTTATTCAACGAGATGGTGCTGTT AAAATCTCGGATTATATGTATTAATGATTCCTAGTTAATGACAAGTTTTGAGTTTATTCA G
Species	Pyrus pyrifolia
Publication	[view all]
Contact	Toshiya Yamamoto
Comment	SNP position in sequence: 438

Contact

Name

Details

Toshiya Yamamoto

First name:	Toshiya
Last name:	Yamamoto
Institution:	National Institute of Fruit Tree Science, Graduate School of Life and Environmental Sciences, University of Tsukuba
Address:	National Institute of Fruit Tree Science, 2-1 Fujimoto, Tsukuba, Ibaraki 305-8605, Japan
Country:	Japan
Email:	toshiya@affrc.go.jp
Last update:	Apr 2014

Publications


Year	Publication
2014	Terakami S, Nishitani C, Kunihisa M, Shirasawa K, Sato S, Tabata S, Kurita K, Kanamori H, Katayose Y, Takada N, Saito T, Yamamoto T. Transcriptome-based single nucleotide polymorphism markers for genome mapping in Japanese pear (Pyrus pyrifolia Nakai). Tree genetics & genomes. 2014; 10(4):853-863.

Map Positions


#	Map Name	Linkage Group	Bin	Position	Locus	MapViewer
1	Pear-integrated_consensus_map-IPCG-2017	LG3	N/A	235.27	JPsnpHou00300	View

Sequence

>JPsnpHou00300 ID=JPsnpHou00300; Name=JPsnpHou00300; organism=Pyrus pyrifolia; type=genetic_marker; length=739bp
GGAAAGCAACTTGCATACATTGTCCGAGGAGACACCAAAGTCAAGACTTC
CAAGAGGTTCAAGAATGCTGCCGGAGTATCTGTGACATTCTTGGGTGAAA
ATGTGTCCACTGGATTCAAACTTGAACAGGAGTATGCCGTTGGCAAGCGC
CTGCTATTGGTGGGTACTACTGGTACTGTCCGATCTCAGGGCGACTCAGC
ATATGGAGCAAATTTGGAGGTGCGGCTAAGGGAAGCAGATTTTCCGATCG
GCCAGGATCAATCCTCATTGGGTCTGTCTCTAGTGCGGTGGAGGGGCGAC
TTGGCCCTGGGGGCAAATCTCCAGTCCCAGTTTTCCCTCGGGCGCAACTA
CAAGATGGCTGTTCGTGCAGGGTTGAACAACAAGCGCAGCGGACAGATCT
CGATCAGAACAAGCAGCTCCGAACAACTCCAACTCGCrCTCATTGCTGTG
ATTCCGGTTGTCAAGGCTATCTACAACAGCATCTGGCCCAGAGCCAGTGA
GAACTACTCCATCTACTAAGATACGTTCTATTCATTTTGTCATCTGTTTC
CATTCTGTTATATTTACGGCGTCGATGTTTTGATATTTTGTCGAATAAAG
TTGAGATTGCGCGATTAGTTAGTATCGAAAACGAGATGGAACTTAGAGAG
CGAGTTTATTCAACGAGATGGTGCTGTTAAAATCTCGGATTATATGTATT
AATGATTCCTAGTTAATGACAAGTTTTGAGTTTATTCAG