JPsnpHou00248, JPsnpHou00248 (genetic_marker) Pyrus pyrifolia

Marker Overview


Name	JPsnpHou00248
dbSNP ID	N/A
Type	SNP
SNP Alleles	A/C
5' Flanking Sequence	AGAAATTGTAGTTAAGAGCTTGGATATCAGCAACTTCTACATTGGTGAGGGTTCAGACTT CAGTGGAGTTCCAACAAAGCTGGTGACGGTGAATGGCTCATTAAGACTCAGTGTACGCAA CTCTGCTTCAATTTTCGGCATTCATGTTACCTCCTCACCTATCGGTCTCCTCTATTCAGA GATTGCGGTAGCAATTGGTCAGTTGAAGAAATATTATCAGCCAAGAAAGAGCCTCCGAAC TATATCAGTAAACTTGCAAGGAACCAAGGTTCCTCTATACGGGGCTGGATCAAGTTTGAC GTACTCAAAGACTGGTGCATTGGTTCCAATTCCGTTGACCTTAAAATTTGAAATCCGGTC TCGAGCGTACGTGGTAGGGAAGCTAGTGAAAACGAAGCGTCGAAGGCGAATCTCTTGTCC TTTGGTTTTGGATCC
3' Flanking Sequence	ACTGTCACCAAACCCATCAAGTTCAATAAGACTTCATGCGCTTATGACTGATGATCCCCT TCnGTGAATGCTTGTGAAAATCGAGTACAGAATTTACTGCAATTTGAGTTTACTTTTTGG CCAGGGACTGCTAACCGAGTTGAGTTGTTCATTCCACATATGACATCCTTTTTCAAGAAA TAAAAAATAAACATTTTTTTGGCCAAAAAAAAAAACAAACGATAGCAACGAGACACAGGA GTAGAG
Species	Pyrus pyrifolia
Publication	[view all]
Contact	Toshiya Yamamoto
Comment	SNP position in sequence: 436

Contact

Name

Details

Toshiya Yamamoto

First name:	Toshiya
Last name:	Yamamoto
Institution:	National Institute of Fruit Tree Science, Graduate School of Life and Environmental Sciences, University of Tsukuba
Address:	National Institute of Fruit Tree Science, 2-1 Fujimoto, Tsukuba, Ibaraki 305-8605, Japan
Country:	Japan
Email:	toshiya@affrc.go.jp
Last update:	Apr 2014

Publications


Year	Publication
2014	Terakami S, Nishitani C, Kunihisa M, Shirasawa K, Sato S, Tabata S, Kurita K, Kanamori H, Katayose Y, Takada N, Saito T, Yamamoto T. Transcriptome-based single nucleotide polymorphism markers for genome mapping in Japanese pear (Pyrus pyrifolia Nakai). Tree genetics & genomes. 2014; 10(4):853-863.

Map Positions


#	Map Name	Linkage Group	Bin	Position	Locus	MapViewer
1	Pear-integrated_consensus_map-IPCG-2017	LG9	N/A	112.15	JPsnpHou00248	View

Sequence

>JPsnpHou00248 ID=JPsnpHou00248; Name=JPsnpHou00248; organism=Pyrus pyrifolia; type=genetic_marker; length=682bp
AGAAATTGTAGTTAAGAGCTTGGATATCAGCAACTTCTACATTGGTGAGG
GTTCAGACTTCAGTGGAGTTCCAACAAAGCTGGTGACGGTGAATGGCTCA
TTAAGACTCAGTGTACGCAACTCTGCTTCAATTTTCGGCATTCATGTTAC
CTCCTCACCTATCGGTCTCCTCTATTCAGAGATTGCGGTAGCAATTGGTC
AGTTGAAGAAATATTATCAGCCAAGAAAGAGCCTCCGAACTATATCAGTA
AACTTGCAAGGAACCAAGGTTCCTCTATACGGGGCTGGATCAAGTTTGAC
GTACTCAAAGACTGGTGCATTGGTTCCAATTCCGTTGACCTTAAAATTTG
AAATCCGGTCTCGAGCGTACGTGGTAGGGAAGCTAGTGAAAACGAAGCGT
CGAAGGCGAATCTCTTGTCCTTTGGTTTTGGATCCmACTGTCACCAAACC
CATCAAGTTCAATAAGACTTCATGCGCTTATGACTGATGATCCCCTTCnG
TGAATGCTTGTGAAAATCGAGTACAGAATTTACTGCAATTTGAGTTTACT
TTTTGGCCAGGGACTGCTAACCGAGTTGAGTTGTTCATTCCACATATGAC
ATCCTTTTTCAAGAAATAAAAAATAAACATTTTTTTGGCCAAAAAAAAAA
ACAAACGATAGCAACGAGACACAGGAGTAGAG