JPsnpHou00559, JPsnpHou00559 (genetic_marker) Pyrus pyrifolia

Marker Overview


Name	JPsnpHou00559
dbSNP ID	N/A
Type	SNP
SNP Alleles	A/C
5' Flanking Sequence	GTCCGGTACAAACATGGATGAGGTTAAGGAGCAAGAGGTTGCTGATAGCACTCCTATGGA TCTAGGTGATGGTGACAATACCGGGGAAGACCAAAAAGCTTCAAATGAAAATCATGGAAA TCCCATGCCTTCAGCCCAACAGGAGGAGGCAGCAATTAAGAAAAAGTATGGAGGCATACT ACCAAAGAAGACTCCCCTAATATCCAAGGACCATGAGCGCGCTTATTTTGATTCTGCTGA TTGGGCATTGGGAAnGCAAGGAGCAAAGCCAAAAGGGCCACTTGAAGCACTCCGCCCAAA GCTGCAGCCCACACCACACCAGCAGGGGCGTTCAAGACGCTCAGCTTATTCTCGTGGAGG CGAAGGTGATGATGGCGGAAATATGAACATTTCCTCGGAGGATCAACTAGATAGTGGCAG CGGTAACAACACTGG
3' Flanking Sequence	TATGAGGATCAGACCCACCACCACGAGTAGCTGCTGCCTGCTGCATTTTCGCAAATTAGA AGCTGAGCATTCTGTCATTACTAAAGTACCAGAGCGAATAACGTAAACAATGCCGGATTT TTGTACTGGTTGTAACGTGTAACATGAATCGTGTACACACTGATGAACACATGACATTCA TTTACTTAAAATTGCATGTTGGACATATACATTATACACTGCAGGCAGAATTTTTAACTA AAGTTTAAAAAAAAACT
Species	Pyrus pyrifolia
Publication	[view all]
Contact	Toshiya Yamamoto
Comment	SNP position in sequence: 436

Contact

Name

Details

Toshiya Yamamoto

First name:	Toshiya
Last name:	Yamamoto
Institution:	National Institute of Fruit Tree Science, Graduate School of Life and Environmental Sciences, University of Tsukuba
Address:	National Institute of Fruit Tree Science, 2-1 Fujimoto, Tsukuba, Ibaraki 305-8605, Japan
Country:	Japan
Email:	toshiya@affrc.go.jp
Last update:	Apr 2014

Publications


Year	Publication
2014	Terakami S, Nishitani C, Kunihisa M, Shirasawa K, Sato S, Tabata S, Kurita K, Kanamori H, Katayose Y, Takada N, Saito T, Yamamoto T. Transcriptome-based single nucleotide polymorphism markers for genome mapping in Japanese pear (Pyrus pyrifolia Nakai). Tree genetics & genomes. 2014; 10(4):853-863.

Map Positions


#	Map Name	Linkage Group	Bin	Position	Locus	MapViewer
1	Pear-integrated_consensus_map-IPCG-2017	LG13	N/A	24.73	JPsnpHou00559	View

Sequence

>JPsnpHou00559 ID=JPsnpHou00559; Name=JPsnpHou00559; organism=Pyrus pyrifolia; type=genetic_marker; length=693bp
GTCCGGTACAAACATGGATGAGGTTAAGGAGCAAGAGGTTGCTGATAGCA
CTCCTATGGATCTAGGTGATGGTGACAATACCGGGGAAGACCAAAAAGCT
TCAAATGAAAATCATGGAAATCCCATGCCTTCAGCCCAACAGGAGGAGGC
AGCAATTAAGAAAAAGTATGGAGGCATACTACCAAAGAAGACTCCCCTAA
TATCCAAGGACCATGAGCGCGCTTATTTTGATTCTGCTGATTGGGCATTG
GGAAnGCAAGGAGCAAAGCCAAAAGGGCCACTTGAAGCACTCCGCCCAAA
GCTGCAGCCCACACCACACCAGCAGGGGCGTTCAAGACGCTCAGCTTATT
CTCGTGGAGGCGAAGGTGATGATGGCGGAAATATGAACATTTCCTCGGAG
GATCAACTAGATAGTGGCAGCGGTAACAACACTGGmTATGAGGATCAGAC
CCACCACCACGAGTAGCTGCTGCCTGCTGCATTTTCGCAAATTAGAAGCT
GAGCATTCTGTCATTACTAAAGTACCAGAGCGAATAACGTAAACAATGCC
GGATTTTTGTACTGGTTGTAACGTGTAACATGAATCGTGTACACACTGAT
GAACACATGACATTCATTTACTTAAAATTGCATGTTGGACATATACATTA
TACACTGCAGGCAGAATTTTTAACTAAAGTTTAAAAAAAAACT