JPsnpHou00620, JPsnpHou00620 (genetic_marker) Pyrus pyrifolia

Marker Overview


Name	JPsnpHou00620
dbSNP ID	N/A
Type	SNP
SNP Alleles	A/T
5' Flanking Sequence	GATGGACTTACCCCTGTGATCTGTGGAGCGTAGGGTGCATTCTTATTGAACTTTGTTCGG GTGAGGCATTATTTCAGACGCACGAGAACTTGGAGCATTTGGCAATGATGGAGAGGGTAT TGGGACCTCTGCCACAGCATATGACCCGAAAGGCCAACCATGGTGCTGAAAAGTATTTTA GGCGGGGTGCACGACTGAATTGGCCTTTAGGAGCAGTTTCAAGGGAGAGCATTAGAGCTG TTAAGAAGCTAAACTGTTTAAAGGATCTGATATTGCGACTTGTAGGGTCGTCGAAAGCCA GTTCCTACCTGACTGATTTGTTGTACGGGTTGCTGAAATATGATCCTTCCGAACGCCTCA CGGCTCGACAGGCACTTGATCACCCCTTCTTCAAGATTCCAACCTGAGGAACCGCATCGC GAAATATAATTGGGT
3' Flanking Sequence	CCCTATGTTAGGATTCGAAGAAGGCAAAGCTAGCTCTTCTAAGGATGGCGAGAGATCGAG GGGGAGAGAGAGATGGAGAGAGCTCAAATAGTAAGTTGAGCTnCACTTGTACATGTACAA ATAGTATAGTGGCCTCATCTATGAAATACTGAACTTTTTCAACTTAAAAAAAAAAANAAA ACTAGAGACNCACGAGACACACGAGGAGTAG
Species	Pyrus pyrifolia
Publication	[view all]
Contact	Toshiya Yamamoto
Comment	SNP position in sequence: 436

Contact

Name

Details

Toshiya Yamamoto

First name:	Toshiya
Last name:	Yamamoto
Institution:	National Institute of Fruit Tree Science, Graduate School of Life and Environmental Sciences, University of Tsukuba
Address:	National Institute of Fruit Tree Science, 2-1 Fujimoto, Tsukuba, Ibaraki 305-8605, Japan
Country:	Japan
Email:	toshiya@affrc.go.jp
Last update:	Apr 2014

Publications


Year	Publication
2014	Terakami S, Nishitani C, Kunihisa M, Shirasawa K, Sato S, Tabata S, Kurita K, Kanamori H, Katayose Y, Takada N, Saito T, Yamamoto T. Transcriptome-based single nucleotide polymorphism markers for genome mapping in Japanese pear (Pyrus pyrifolia Nakai). Tree genetics & genomes. 2014; 10(4):853-863.

Map Positions


#	Map Name	Linkage Group	Bin	Position	Locus	MapViewer
1	Pear-integrated_consensus_map-IPCG-2017	LG15	N/A	29.36	JPsnpHou00620	View

Sequence

>JPsnpHou00620 ID=JPsnpHou00620; Name=JPsnpHou00620; organism=Pyrus pyrifolia; type=genetic_marker; length=647bp
GATGGACTTACCCCTGTGATCTGTGGAGCGTAGGGTGCATTCTTATTGAA
CTTTGTTCGGGTGAGGCATTATTTCAGACGCACGAGAACTTGGAGCATTT
GGCAATGATGGAGAGGGTATTGGGACCTCTGCCACAGCATATGACCCGAA
AGGCCAACCATGGTGCTGAAAAGTATTTTAGGCGGGGTGCACGACTGAAT
TGGCCTTTAGGAGCAGTTTCAAGGGAGAGCATTAGAGCTGTTAAGAAGCT
AAACTGTTTAAAGGATCTGATATTGCGACTTGTAGGGTCGTCGAAAGCCA
GTTCCTACCTGACTGATTTGTTGTACGGGTTGCTGAAATATGATCCTTCC
GAACGCCTCACGGCTCGACAGGCACTTGATCACCCCTTCTTCAAGATTCC
AACCTGAGGAACCGCATCGCGAAATATAATTGGGTwCCCTATGTTAGGAT
TCGAAGAAGGCAAAGCTAGCTCTTCTAAGGATGGCGAGAGATCGAGGGGG
AGAGAGAGATGGAGAGAGCTCAAATAGTAAGTTGAGCTnCACTTGTACAT
GTACAAATAGTATAGTGGCCTCATCTATGAAATACTGAACTTTTTCAACT
TAAAAAAAAAAANAAAACTAGAGACNCACGAGACACACGAGGAGTAG