JPsnpHou00280, JPsnpHou00280 (genetic_marker) Pyrus pyrifolia

Marker Overview


Name	JPsnpHou00280
dbSNP ID	N/A
Type	SNP
SNP Alleles	T/C
5' Flanking Sequence	GTGGAGTTCTTAGCCGGTAAGGTTGGCCATGTGGATTATGACAAGGTCCCTGGGGTCGTC TACACTCACCCTGAGGTTGCATCTGTTGGAAAACTGAGGAACAAGTGAAGGCCTCTGGCG TTGCATACCGAGTTGGAAAGTTCCCTTTCATGGCAAACAGCAGAGCCAAGGCAATAGACG GAATGGCTGAAGGACTCGTCAAGATATTGGCCGAGAAGGAAACAGATAAGATATTGGGAG TTCATATCATGGCATCCAATGCCGGAGAGCTCATTCACGAGGCGGCCATAGCCTTGCAGT ATGATGCATCGAGTGAGGACATTGCACGCGTTTGCCATGCACATCCAACCATGAGCGAGG CGTTGAAGGAAGCTGCCATGGCTACATATGACAAGCCCATTCACATCTAGAAAAGTCATT ACTTGATTAA
3' Flanking Sequence	CTTCGTTTTCAATTTTTGTTTTTAAGAATTTTGGAACGACTTGGTAAGAAGTTTCCATTT AGTTGTTTTAGCCTTCATCGAAGGTGGCAGATAAAAGCGCTTGAAAACAAGGTTGGTGTT TTGTTCACCCTTCCCCATGGCGATGTCAAGGGAATAACTCTCTATGCTCTCnCATCTCAC TGTGAATAACAACATAAGGATTGTTAA
Species	Pyrus pyrifolia
Publication	[view all]
Contact	Toshiya Yamamoto
Comment	SNP position in sequence: 431

Contact

Name

Details

Toshiya Yamamoto

First name:	Toshiya
Last name:	Yamamoto
Institution:	National Institute of Fruit Tree Science, Graduate School of Life and Environmental Sciences, University of Tsukuba
Address:	National Institute of Fruit Tree Science, 2-1 Fujimoto, Tsukuba, Ibaraki 305-8605, Japan
Country:	Japan
Email:	toshiya@affrc.go.jp
Last update:	Apr 2014

Publications


Year	Publication
2014	Terakami S, Nishitani C, Kunihisa M, Shirasawa K, Sato S, Tabata S, Kurita K, Kanamori H, Katayose Y, Takada N, Saito T, Yamamoto T. Transcriptome-based single nucleotide polymorphism markers for genome mapping in Japanese pear (Pyrus pyrifolia Nakai). Tree genetics & genomes. 2014; 10(4):853-863.

Map Positions


#	Map Name	Linkage Group	Bin	Position	Locus	MapViewer
1	Pear-integrated_consensus_map-IPCG-2017	LG16	N/A	93.13	JPsnpHou00280	View

Sequence

>JPsnpHou00280 ID=JPsnpHou00280; Name=JPsnpHou00280; organism=Pyrus pyrifolia; type=genetic_marker; length=638bp
GTGGAGTTCTTAGCCGGTAAGGTTGGCCATGTGGATTATGACAAGGTCCC
TGGGGTCGTCTACACTCACCCTGAGGTTGCATCTGTTGGAAAACTGAGGA
ACAAGTGAAGGCCTCTGGCGTTGCATACCGAGTTGGAAAGTTCCCTTTCA
TGGCAAACAGCAGAGCCAAGGCAATAGACGGAATGGCTGAAGGACTCGTC
AAGATATTGGCCGAGAAGGAAACAGATAAGATATTGGGAGTTCATATCAT
GGCATCCAATGCCGGAGAGCTCATTCACGAGGCGGCCATAGCCTTGCAGT
ATGATGCATCGAGTGAGGACATTGCACGCGTTTGCCATGCACATCCAACC
ATGAGCGAGGCGTTGAAGGAAGCTGCCATGGCTACATATGACAAGCCCAT
TCACATCTAGAAAAGTCATTACTTGATTAAyCTTCGTTTTCAATTTTTGT
TTTTAAGAATTTTGGAACGACTTGGTAAGAAGTTTCCATTTAGTTGTTTT
AGCCTTCATCGAAGGTGGCAGATAAAAGCGCTTGAAAACAAGGTTGGTGT
TTTGTTCACCCTTCCCCATGGCGATGTCAAGGGAATAACTCTCTATGCTC
TCnCATCTCACTGTGAATAACAACATAAGGATTGTTAA