JPsnpHou00477, JPsnpHou00477 (genetic_marker) Pyrus pyrifolia

Marker Overview


Name	JPsnpHou00477
dbSNP ID	N/A
Type	SNP
SNP Alleles	A/T
5' Flanking Sequence	GCGGAGAGTCCACATCACCGACGACCTGGACGACGTCGTCGACGATGAGGAGGACGACAC CTGGAAAGAATGGGGCAAGAAAACGAAACCCTCTTCCGATTTCGGTCCGCCGCCCGATCT GTCGAAGATGGACATGTCGCAGATGCAGGAGGAGATGATGAAAAGGCAGACCGGGCCGGC TTTCGGGTTCGTGAAGCTCCGGATGGGCGAGAAGCGGACTCGGGATACAGTGGCCGAGCT TGCTATGAAGTGGACTCAAGTTCTGAGGACCGGAGCAATTGAGGCAAGGTTCATGGGTGT TGATCTAAACACGATCATGTTCAACATGGAAAGAGGCCAAGACACAACAGAGTTGAAGGA GTTTGCGTTGAAACAACCAGAGGCCTACGAGATAAAGATTGGCGATCAAGTGTTTCGAAG ACCAGG
3' Flanking Sequence	GATCCTCCnTTAGAGGAACTCGTTGAGAAGCTCCGGAATGAGAAAAAGAGAAAGGAGAGT GACAGTCCAACAGAGAGCAATATACATTTGAAAGAGGAATTGTAGTTTGTACCnGTAAGT TTTCTGACATGAAATATAATAACCCCTGTTGTAAATCCTTAGCAACCTCCACTCCTAATG ATGTTGGAAAAGGTAACTGTAAACGAGCTTTGTTTCTCGGAATTCTGTTTTTATTTATGA ATTTGTTGTATGAAACGTGACAACTTGCTCTGTTCAACTAGTTTAAATAGAGAAGATGCA TAC
Species	Pyrus pyrifolia
Publication	[view all]
Contact	Toshiya Yamamoto
Comment	SNP position in sequence: 427

Contact

Name

Details

Toshiya Yamamoto

First name:	Toshiya
Last name:	Yamamoto
Institution:	National Institute of Fruit Tree Science, Graduate School of Life and Environmental Sciences, University of Tsukuba
Address:	National Institute of Fruit Tree Science, 2-1 Fujimoto, Tsukuba, Ibaraki 305-8605, Japan
Country:	Japan
Email:	toshiya@affrc.go.jp
Last update:	Apr 2014

Publications


Year	Publication
2014	Terakami S, Nishitani C, Kunihisa M, Shirasawa K, Sato S, Tabata S, Kurita K, Kanamori H, Katayose Y, Takada N, Saito T, Yamamoto T. Transcriptome-based single nucleotide polymorphism markers for genome mapping in Japanese pear (Pyrus pyrifolia Nakai). Tree genetics & genomes. 2014; 10(4):853-863.

Map Positions


#	Map Name	Linkage Group	Bin	Position	Locus	MapViewer
1	Pear-integrated_consensus_map-IPCG-2017	LG1	N/A	67.11	JPsnpHou00477	View

Sequence

>JPsnpHou00477 ID=JPsnpHou00477; Name=JPsnpHou00477; organism=Pyrus pyrifolia; type=genetic_marker; length=730bp
GCGGAGAGTCCACATCACCGACGACCTGGACGACGTCGTCGACGATGAGG
AGGACGACACCTGGAAAGAATGGGGCAAGAAAACGAAACCCTCTTCCGAT
TTCGGTCCGCCGCCCGATCTGTCGAAGATGGACATGTCGCAGATGCAGGA
GGAGATGATGAAAAGGCAGACCGGGCCGGCTTTCGGGTTCGTGAAGCTCC
GGATGGGCGAGAAGCGGACTCGGGATACAGTGGCCGAGCTTGCTATGAAG
TGGACTCAAGTTCTGAGGACCGGAGCAATTGAGGCAAGGTTCATGGGTGT
TGATCTAAACACGATCATGTTCAACATGGAAAGAGGCCAAGACACAACAG
AGTTGAAGGAGTTTGCGTTGAAACAACCAGAGGCCTACGAGATAAAGATT
GGCGATCAAGTGTTTCGAAGACCAGGwGATCCTCCnTTAGAGGAACTCGT
TGAGAAGCTCCGGAATGAGAAAAAGAGAAAGGAGAGTGACAGTCCAACAG
AGAGCAATATACATTTGAAAGAGGAATTGTAGTTTGTACCnGTAAGTTTT
CTGACATGAAATATAATAACCCCTGTTGTAAATCCTTAGCAACCTCCACT
CCTAATGATGTTGGAAAAGGTAACTGTAAACGAGCTTTGTTTCTCGGAAT
TCTGTTTTTATTTATGAATTTGTTGTATGAAACGTGACAACTTGCTCTGT
TCAACTAGTTTAAATAGAGAAGATGCATAC