JPsnpHou00374, JPsnpHou00374 (genetic_marker) Pyrus pyrifolia

Marker Overview


Name	JPsnpHou00374
dbSNP ID	N/A
Type	SNP
SNP Alleles	T/C
5' Flanking Sequence	TAAAAATATATATAATATTGCAAACTTATTCATATTAATTATTATTGTTACAAAAGTATA TTTAGTTTTTTGTATAAATATGTATTATCCCAACAGTATTCATATTTAATTATTATTGTG ACAAAAGTATATTTTGCTTTGGACTTTTAGGTGGTCTTCACTTTTTTTAAAGCCTGCACG TGTTTATCAAATTTTAGTAAATAAATGCTTATCAATTATTCTCACGTTTAGACGTGGTAC GCAGCCCGCTATATAAACCCCATGCAATATGCGGGGAAGAACCAACCTAGCTATCTCGAT CACCAAAACCCCTCCAGTTAACTATGGCAATGCATGATTTAGGCTCTTTGCTCTTGTGTG TCTTGCTACTCAATGGCTTTGCATTGACAAACACCAAAGCTGCTAAGCCAGATAAACCCA TTGT
3' Flanking Sequence	TGTAACTCACTTGACAGGACCAAGTTTGATGCTCTAAAACCAGGGTTCGTCTTTGGTGGA TCTACAGCAGCTTACCAGGCCAGTCCCTGCTAGGGCTTAGCTATTTAATTACCCTTTAAT TAATTTGAGTTTCATATAATCACATAGGTCTAATTTGATTTCAATGTCAGAAAAACTATA GCATATATATATGCACATGCACATTTCAGTTTCATTCCAAGCATGAATATTGACATCTTC AGTTTGAAT
Species	Pyrus pyrifolia
Publication	[view all]
Contact	Toshiya Yamamoto
Comment	SNP position in sequence: 425

Contact

Name

Details

Toshiya Yamamoto

First name:	Toshiya
Last name:	Yamamoto
Institution:	National Institute of Fruit Tree Science, Graduate School of Life and Environmental Sciences, University of Tsukuba
Address:	National Institute of Fruit Tree Science, 2-1 Fujimoto, Tsukuba, Ibaraki 305-8605, Japan
Country:	Japan
Email:	toshiya@affrc.go.jp
Last update:	Apr 2014

Publications


Year	Publication
2014	Terakami S, Nishitani C, Kunihisa M, Shirasawa K, Sato S, Tabata S, Kurita K, Kanamori H, Katayose Y, Takada N, Saito T, Yamamoto T. Transcriptome-based single nucleotide polymorphism markers for genome mapping in Japanese pear (Pyrus pyrifolia Nakai). Tree genetics & genomes. 2014; 10(4):853-863.

Map Positions


#	Map Name	Linkage Group	Bin	Position	Locus	MapViewer
1	Pear-integrated_consensus_map-IPCG-2017	LG2	N/A	36.98	JPsnpHou00374	View

Sequence

>JPsnpHou00374 ID=JPsnpHou00374; Name=JPsnpHou00374; organism=Pyrus pyrifolia; type=genetic_marker; length=674bp
TAAAAATATATATAATATTGCAAACTTATTCATATTAATTATTATTGTTA
CAAAAGTATATTTAGTTTTTTGTATAAATATGTATTATCCCAACAGTATT
CATATTTAATTATTATTGTGACAAAAGTATATTTTGCTTTGGACTTTTAG
GTGGTCTTCACTTTTTTTAAAGCCTGCACGTGTTTATCAAATTTTAGTAA
ATAAATGCTTATCAATTATTCTCACGTTTAGACGTGGTACGCAGCCCGCT
ATATAAACCCCATGCAATATGCGGGGAAGAACCAACCTAGCTATCTCGAT
CACCAAAACCCCTCCAGTTAACTATGGCAATGCATGATTTAGGCTCTTTG
CTCTTGTGTGTCTTGCTACTCAATGGCTTTGCATTGACAAACACCAAAGC
TGCTAAGCCAGATAAACCCATTGTyTGTAACTCACTTGACAGGACCAAGT
TTGATGCTCTAAAACCAGGGTTCGTCTTTGGTGGATCTACAGCAGCTTAC
CAGGCCAGTCCCTGCTAGGGCTTAGCTATTTAATTACCCTTTAATTAATT
TGAGTTTCATATAATCACATAGGTCTAATTTGATTTCAATGTCAGAAAAA
CTATAGCATATATATATGCACATGCACATTTCAGTTTCATTCCAAGCATG
AATATTGACATCTTCAGTTTGAAT