JPsnpHou00161, JPsnpHou00161 (genetic_marker) Pyrus pyrifolia

Marker Overview


Name	JPsnpHou00161
dbSNP ID	N/A
Type	SNP
SNP Alleles	A/C
5' Flanking Sequence	AACACAACTCATCCCACAATGGCGTCGGAGAGCAAGATGGCGAATCCCATGAGGGAAATC AAGGTTCAGAAGCTCGTCCTCAACATCTCCGTCGGAGAAAGCGGCGATCGTCTCACCAGA GCCGCCAAGGTCTTGGAGCAGCTCAGTGGGCAGACCCCTGTCTTCTCCAAAGCTCGATAC ACTGTGAGGTCTTTTGGGATCAGGCGTAACGAGAAGATTGCCTGCTACGTGACTGTCCGC GGCGAAAAGGCAATGCAGCTTTTGGAGAGTGGACTGAAGGTCAAGGAATACGAGCTGTTG CGCAGGAACTTCAGTGACACCGGATGCTTTGGTTTCGGTATTCAGGAACACATTGATCTC GGAATCAAGTATGACCCTTCCACTGGTATCTATGGTATGGACTTCTATGTTGTCCTAGAG CG
3' Flanking Sequence	CCAGGGTACCGTGTGGGACGTCGCCGCAGATGCAAGTCGCGCGTTGGTATTCAGCACAGG GTTACCAAGGAGGACTCGATGAAGTGGTTCCAGGTCAAATATGAAGGAGTCATCCTCAAC AAGTCCCAAAATATTACCGGCTAGACAGATCAACCACAATCTCTCATATTTTGTTTTAGG TTTAGCAAGTTGTTGCTACTGTTTACCGATTTCCAAGTAAGAGCTAGTATTTTCTTTAAG ACGATGTGCGAGTATTTTTGATCTTAAGAGCTATCTGACGCTCTCATGTTTCAACTCTTT TTGCTTATATGGGAGCATGTTTTATGTACTGTTT
Species	Pyrus pyrifolia
Publication	[view all]
Contact	Toshiya Yamamoto
Comment	SNP position in sequence: 423

Contact

Name

Details

Toshiya Yamamoto

First name:	Toshiya
Last name:	Yamamoto
Institution:	National Institute of Fruit Tree Science, Graduate School of Life and Environmental Sciences, University of Tsukuba
Address:	National Institute of Fruit Tree Science, 2-1 Fujimoto, Tsukuba, Ibaraki 305-8605, Japan
Country:	Japan
Email:	toshiya@affrc.go.jp
Last update:	Apr 2014

Publications


Year	Publication
2014	Terakami S, Nishitani C, Kunihisa M, Shirasawa K, Sato S, Tabata S, Kurita K, Kanamori H, Katayose Y, Takada N, Saito T, Yamamoto T. Transcriptome-based single nucleotide polymorphism markers for genome mapping in Japanese pear (Pyrus pyrifolia Nakai). Tree genetics & genomes. 2014; 10(4):853-863.

Map Positions


#	Map Name	Linkage Group	Bin	Position	Locus	MapViewer
1	Pear-integrated_consensus_map-IPCG-2017	LG10	N/A	164.9	JPsnpHou00161	View

Sequence

>JPsnpHou00161 ID=JPsnpHou00161; Name=JPsnpHou00161; organism=Pyrus pyrifolia; type=genetic_marker; length=757bp
AACACAACTCATCCCACAATGGCGTCGGAGAGCAAGATGGCGAATCCCAT
GAGGGAAATCAAGGTTCAGAAGCTCGTCCTCAACATCTCCGTCGGAGAAA
GCGGCGATCGTCTCACCAGAGCCGCCAAGGTCTTGGAGCAGCTCAGTGGG
CAGACCCCTGTCTTCTCCAAAGCTCGATACACTGTGAGGTCTTTTGGGAT
CAGGCGTAACGAGAAGATTGCCTGCTACGTGACTGTCCGCGGCGAAAAGG
CAATGCAGCTTTTGGAGAGTGGACTGAAGGTCAAGGAATACGAGCTGTTG
CGCAGGAACTTCAGTGACACCGGATGCTTTGGTTTCGGTATTCAGGAACA
CATTGATCTCGGAATCAAGTATGACCCTTCCACTGGTATCTATGGTATGG
ACTTCTATGTTGTCCTAGAGCGmCCAGGGTACCGTGTGGGACGTCGCCGC
AGATGCAAGTCGCGCGTTGGTATTCAGCACAGGGTTACCAAGGAGGACTC
GATGAAGTGGTTCCAGGTCAAATATGAAGGAGTCATCCTCAACAAGTCCC
AAAATATTACCGGCTAGACAGATCAACCACAATCTCTCATATTTTGTTTT
AGGTTTAGCAAGTTGTTGCTACTGTTTACCGATTTCCAAGTAAGAGCTAG
TATTTTCTTTAAGACGATGTGCGAGTATTTTTGATCTTAAGAGCTATCTG
ACGCTCTCATGTTTCAACTCTTTTTGCTTATATGGGAGCATGTTTTATGT
ACTGTTT