JPsnpHou00213, JPsnpHou00213 (genetic_marker) Pyrus pyrifolia

Marker Overview


Name	JPsnpHou00213
dbSNP ID	N/A
Type	SNP
SNP Alleles	A/T
5' Flanking Sequence	GGGAGAACAAGGCTCAAAGACTCCAGAAATCTCATCAGTTCTTTCTTCTGTGATGGAAGA AACTGATGACTCACTGTTTCTGGAGGATGCTAACCCAACGAAGAAGCTGAAGCCCAACTC ACGGGATCTGGTGCTTCCTCAGGATAGTACAGGAAAGACACTGTCTGATGAGCTCTCAGC TTTTGAGATGAAGTACTTTCAGACCCCATATCTTGATGGGAGCTGGGATGCTTCAGTGGA CGCCTTCCTTAACGGAGACGCAACTCAGGATGGTGGTAATCCAGTGGACCTATGGACCTT TGACGATCTGCCAGCAATTGTTGGAGGAACTTTCTGAGCGATGAACCTTACCCCAGCTTT CCAGTTTATGTAAATAAAGCTACATGATGTGTTTCGGGTTGGAGTGCATCTGTGCAAGCT G
3' Flanking Sequence	TGACATGGATAAGGCTTGTACGGGGGAGTATTTAAGCCGTAGCTAATGGCGTATGGAGAT CGTATAGGTATTAGGATTACTTTCACCTCCAAAGAACTTGTGGTTTCTGAACTTTCATGT TTGTAACGATGAAATTGTGTGAGTTATGATGACACTGAAACCTCATATGTACTTGTTAAA ATTTATTTCGGTCTTCCTTTTTACAAGAGGCCATCAGATTTTGCCAAAAAAAAAAAA
Species	Pyrus pyrifolia
Publication	[view all]
Contact	Toshiya Yamamoto
Comment	SNP position in sequence: 422

Contact

Name

Details

Toshiya Yamamoto

First name:	Toshiya
Last name:	Yamamoto
Institution:	National Institute of Fruit Tree Science, Graduate School of Life and Environmental Sciences, University of Tsukuba
Address:	National Institute of Fruit Tree Science, 2-1 Fujimoto, Tsukuba, Ibaraki 305-8605, Japan
Country:	Japan
Email:	toshiya@affrc.go.jp
Last update:	Apr 2014

Publications


Year	Publication
2014	Terakami S, Nishitani C, Kunihisa M, Shirasawa K, Sato S, Tabata S, Kurita K, Kanamori H, Katayose Y, Takada N, Saito T, Yamamoto T. Transcriptome-based single nucleotide polymorphism markers for genome mapping in Japanese pear (Pyrus pyrifolia Nakai). Tree genetics & genomes. 2014; 10(4):853-863.

Map Positions


#	Map Name	Linkage Group	Bin	Position	Locus	MapViewer
1	Pear-integrated_consensus_map-IPCG-2017	LG17	N/A	155.47	JPsnpHou00213	View

Sequence

>JPsnpHou00213 ID=JPsnpHou00213; Name=JPsnpHou00213; organism=Pyrus pyrifolia; type=genetic_marker; length=659bp
GGGAGAACAAGGCTCAAAGACTCCAGAAATCTCATCAGTTCTTTCTTCTG
TGATGGAAGAAACTGATGACTCACTGTTTCTGGAGGATGCTAACCCAACG
AAGAAGCTGAAGCCCAACTCACGGGATCTGGTGCTTCCTCAGGATAGTAC
AGGAAAGACACTGTCTGATGAGCTCTCAGCTTTTGAGATGAAGTACTTTC
AGACCCCATATCTTGATGGGAGCTGGGATGCTTCAGTGGACGCCTTCCTT
AACGGAGACGCAACTCAGGATGGTGGTAATCCAGTGGACCTATGGACCTT
TGACGATCTGCCAGCAATTGTTGGAGGAACTTTCTGAGCGATGAACCTTA
CCCCAGCTTTCCAGTTTATGTAAATAAAGCTACATGATGTGTTTCGGGTT
GGAGTGCATCTGTGCAAGCTGwTGACATGGATAAGGCTTGTACGGGGGAG
TATTTAAGCCGTAGCTAATGGCGTATGGAGATCGTATAGGTATTAGGATT
ACTTTCACCTCCAAAGAACTTGTGGTTTCTGAACTTTCATGTTTGTAACG
ATGAAATTGTGTGAGTTATGATGACACTGAAACCTCATATGTACTTGTTA
AAATTTATTTCGGTCTTCCTTTTTACAAGAGGCCATCAGATTTTGCCAAA
AAAAAAAAA