JPsnpHou00086, JPsnpHou00086 (genetic_marker) Pyrus pyrifolia

Marker Overview


Name	JPsnpHou00086
dbSNP ID	N/A
Type	SNP
SNP Alleles	T/C
5' Flanking Sequence	AAAGAACATTTTCTGCTGGGGCTGGCAAGGCAAAGAAGGACCAAAAGGGGTGGTTCTCAA ACTGATGCACCGAAAGCGTCAACTCTGGCCAAAGAAGTCAAGGCTACTACTGTGGTCGGA GGCAATATCCTAAAGGATGGAACGGATCCTAAGATCTTGCCAGATTCTGAGTACCCTGAT TGGTTGTGGGGTCTACTTGATAAGCGCCCTGCATTGAGTGAATTAAGCCGGAAGAAGATT GAAACTCTCCCCTATGAAGATCTCAAGCGTTTTGTTAAGCTGGATAACCGAAGAAGTATC AAGGAGAATAACTCTCTTAAGGCCAAGAACTAGTTTCTATTTGTCCTTTTGATTTGCGAA CAAATGAACTGAATCAGCAGTATTAGCTTCACCGGTAAGGCTGTTTCTCGGTCCCTG
3' Flanking Sequence	ATGAATCTAAGGCAGGTTAGATGTACTTCTCTGCGGAAATGCTCTTTTGTATGTTTTGAG GATCTGTCTCAGAAATATATTATATTCTTGCCTGTTTTCTGAACAAATTGGAAATTAAGT GTTGGTAAACTTTGCTGACTAATAGATTAAGGTCT
Species	Pyrus pyrifolia
Publication	[view all]
Contact	Toshiya Yamamoto
Comment	SNP position in sequence: 418

Contact

Name

Details

Toshiya Yamamoto

First name:	Toshiya
Last name:	Yamamoto
Institution:	National Institute of Fruit Tree Science, Graduate School of Life and Environmental Sciences, University of Tsukuba
Address:	National Institute of Fruit Tree Science, 2-1 Fujimoto, Tsukuba, Ibaraki 305-8605, Japan
Country:	Japan
Email:	toshiya@affrc.go.jp
Last update:	Apr 2014

Publications


Year	Publication
2014	Terakami S, Nishitani C, Kunihisa M, Shirasawa K, Sato S, Tabata S, Kurita K, Kanamori H, Katayose Y, Takada N, Saito T, Yamamoto T. Transcriptome-based single nucleotide polymorphism markers for genome mapping in Japanese pear (Pyrus pyrifolia Nakai). Tree genetics & genomes. 2014; 10(4):853-863.

Map Positions


#	Map Name	Linkage Group	Bin	Position	Locus	MapViewer
1	Pear-integrated_consensus_map-IPCG-2017	LG3	N/A	145.64	JPsnpHou00086	View

Sequence

>JPsnpHou00086 ID=JPsnpHou00086; Name=JPsnpHou00086; organism=Pyrus pyrifolia; type=genetic_marker; length=573bp
AAAGAACATTTTCTGCTGGGGCTGGCAAGGCAAAGAAGGACCAAAAGGGG
TGGTTCTCAAACTGATGCACCGAAAGCGTCAACTCTGGCCAAAGAAGTCA
AGGCTACTACTGTGGTCGGAGGCAATATCCTAAAGGATGGAACGGATCCT
AAGATCTTGCCAGATTCTGAGTACCCTGATTGGTTGTGGGGTCTACTTGA
TAAGCGCCCTGCATTGAGTGAATTAAGCCGGAAGAAGATTGAAACTCTCC
CCTATGAAGATCTCAAGCGTTTTGTTAAGCTGGATAACCGAAGAAGTATC
AAGGAGAATAACTCTCTTAAGGCCAAGAACTAGTTTCTATTTGTCCTTTT
GATTTGCGAACAAATGAACTGAATCAGCAGTATTAGCTTCACCGGTAAGG
CTGTTTCTCGGTCCCTGyATGAATCTAAGGCAGGTTAGATGTACTTCTCT
GCGGAAATGCTCTTTTGTATGTTTTGAGGATCTGTCTCAGAAATATATTA
TATTCTTGCCTGTTTTCTGAACAAATTGGAAATTAAGTGTTGGTAAACTT
TGCTGACTAATAGATTAAGGTCT