JPsnpHou00111, JPsnpHou00111 (genetic_marker) Pyrus pyrifolia

Marker Overview


Name	JPsnpHou00111
dbSNP ID	N/A
Type	SNP
SNP Alleles	C/G
5' Flanking Sequence	TCCAGTTTCACCACCACGACGGCGAGGATGACGAAGAAGCTGGAGAGGAAGTAGAAGAGG AGGAGGAGGAAGAAGAAGAAGATAGATCGGATAACGGGGACGAAGAGAGCCAGGAAGATC AGCAAGAGAGAGATGAAGAAGACATGCGACGACATCGTCGAGACGTGCTTCGTCTCCACA TCCGAGACATTGCGACCCGAGAGAGCAGCGGGAGGAACCGGATTCTGGATTGGGCCGAGA TCTTGATGGGGCTGGAGGACAACTCGATCGAATTCCGGCTCGAAATGCCCGAATCGGACC GGTATATCGGCAATCCCGAGGATTACGTGGACGCAGCCGGCTATGAGGCTTTGCTGCAGA CCTTGGCTGAGAGCGATAATGCTGGAAGGAGAGGG
3' Flanking Sequence	CTCCACCGGCGGCGAAGAATGCTATGTCGGAGTTACCGTCGGTCAAGATCGCGTCAGAGG ATGAGGCCGTGGTGTGCGCCATATGCAAGGACGTGGTGAATGTTGGTGACATGTCGAAGA AGCTGCCGTGTGGGCATGGTTACCACGGCGATTGCATCGTTCCTTGGCTGAGTTCCAGAA ATACTTGCCCGGTTTGCCGGTTCGAGCTGCCAACCGATGATCCGGAATACGAGGAGGAGA GGAAGAAGCGAGCTGTGACTGTTAGCGCGGCTGGAGCTTCCAGTTCTGGCGGAGATAATT CAATCTCTCAnTGATTGGAATCGGTATCGCCATTTCCTCACTTTTCCTTGCTGCATTTGT AATTGATTTACTTGCTTTTGTTTGTCTTGTTATTAGCTTAGTAGTCGTTTCGAAGAAGAA ATTGAAATTTGTTATCATGTTTTTCCTATTTTCTTCTGGATGTAAAATAATTTATTTGAA CTCAAATTTTCTGTTGGTGTTTGCTAACAAAAAAAAAA
Species	Pyrus pyrifolia
Publication	[view all]
Contact	Toshiya Yamamoto
Comment	SNP position in sequence: 396

Contact

Name

Details

Toshiya Yamamoto

First name:	Toshiya
Last name:	Yamamoto
Institution:	National Institute of Fruit Tree Science, Graduate School of Life and Environmental Sciences, University of Tsukuba
Address:	National Institute of Fruit Tree Science, 2-1 Fujimoto, Tsukuba, Ibaraki 305-8605, Japan
Country:	Japan
Email:	toshiya@affrc.go.jp
Last update:	Apr 2014

Publications


Year	Publication
2014	Terakami S, Nishitani C, Kunihisa M, Shirasawa K, Sato S, Tabata S, Kurita K, Kanamori H, Katayose Y, Takada N, Saito T, Yamamoto T. Transcriptome-based single nucleotide polymorphism markers for genome mapping in Japanese pear (Pyrus pyrifolia Nakai). Tree genetics & genomes. 2014; 10(4):853-863.

Map Positions


#	Map Name	Linkage Group	Bin	Position	Locus	MapViewer
1	Pear-integrated_consensus_map-IPCG-2017	LG8	N/A	26.7	JPsnpHou00111	View

Sequence

>JPsnpHou00111 ID=JPsnpHou00111; Name=JPsnpHou00111; organism=Pyrus pyrifolia; type=genetic_marker; length=914bp
TCCAGTTTCACCACCACGACGGCGAGGATGACGAAGAAGCTGGAGAGGAA
GTAGAAGAGGAGGAGGAGGAAGAAGAAGAAGATAGATCGGATAACGGGGA
CGAAGAGAGCCAGGAAGATCAGCAAGAGAGAGATGAAGAAGACATGCGAC
GACATCGTCGAGACGTGCTTCGTCTCCACATCCGAGACATTGCGACCCGA
GAGAGCAGCGGGAGGAACCGGATTCTGGATTGGGCCGAGATCTTGATGGG
GCTGGAGGACAACTCGATCGAATTCCGGCTCGAAATGCCCGAATCGGACC
GGTATATCGGCAATCCCGAGGATTACGTGGACGCAGCCGGCTATGAGGCT
TTGCTGCAGACCTTGGCTGAGAGCGATAATGCTGGAAGGAGAGGGsCTCC
ACCGGCGGCGAAGAATGCTATGTCGGAGTTACCGTCGGTCAAGATCGCGT
CAGAGGATGAGGCCGTGGTGTGCGCCATATGCAAGGACGTGGTGAATGTT
GGTGACATGTCGAAGAAGCTGCCGTGTGGGCATGGTTACCACGGCGATTG
CATCGTTCCTTGGCTGAGTTCCAGAAATACTTGCCCGGTTTGCCGGTTCG
AGCTGCCAACCGATGATCCGGAATACGAGGAGGAGAGGAAGAAGCGAGCT
GTGACTGTTAGCGCGGCTGGAGCTTCCAGTTCTGGCGGAGATAATTCAAT
CTCTCAnTGATTGGAATCGGTATCGCCATTTCCTCACTTTTCCTTGCTGC
ATTTGTAATTGATTTACTTGCTTTTGTTTGTCTTGTTATTAGCTTAGTAG
TCGTTTCGAAGAAGAAATTGAAATTTGTTATCATGTTTTTCCTATTTTCT
TCTGGATGTAAAATAATTTATTTGAACTCAAATTTTCTGTTGGTGTTTGC
TAACAAAAAAAAAA