JPsnpHou00206, JPsnpHou00206 (genetic_marker) Pyrus pyrifolia

Marker Overview


Name	JPsnpHou00206
dbSNP ID	N/A
Type	SNP
SNP Alleles	T/C
5' Flanking Sequence	GAGAATTTGGTTTGAAGAAGTTCCGAGAGTTTGGTTTTGTTGAAGATGCAGGGTGATCGA ATTCAGGGGTCTCCTTCTTATTACAGTGTTCTTGGTGTCGGCTCGGAGTCTTCCGTGGAA GAGATAAGGCGTGCATATCGCAAGCTAGCGATGAAATGGCATCCGGACAGGTGGACAAGA ACCCCTTCTTTGTTGGGTGAAGCCAAGCGGAAATTCCAGCAAATTCAAGAAGCCTATTCA GTGTTATCAGACCAGAGAAAACGAAGTATGTACGATGTTGGCCTGTACGATCCCGATGAC GACGAAGAGGACGAGGGGTTCAGTGATTTTGTGCAAGAAATGGTGTCTCTGATGGCGGAA TCCAGAAGAGAGGCAAAGAGTTATACCATGGAGGA
3' Flanking Sequence	CTGCAAGCAATGTTCATGGAGATGGTCAAAGGATTCGAGACTCCTCCTTCCTCTTTCTTC TGTGGACAACCGGGGGCTTTCGAACAATCTGGATGCTTGAAAAGAACGCGTCTCGAATCT AATTCCTGGATTGGCAGAGATTCAGGTGCCGGTTCATCTCTCCATGTACCAAACTTGGGG AnGTACGGTGAGGGGTTCTTTACATTTTAGTAGCAAGGACAAAGACGATAAGAAAATTCT GGAAGGACAAAGATGATAAGAATTCTTTCGAGTGTTTGATTTCTTTTGCGGTCCTTCCAC AGCGGGTTGTGTGTCCTCTTTCACTTGTTTTTTGGAGACCACATGTATATAGAAAGGCAA GTAGATGAAAGATTGCACGTCTTCTCTTTGTTGTTGTGTACTCATCTTATAACTTGTAGG CTGTGAATTTGGGCAAATAAAAAAAAAAAANAAAATAGAGACTCGACGAACGACAC
Species	Pyrus pyrifolia
Publication	[view all]
Contact	Toshiya Yamamoto
Comment	SNP position in sequence: 396

Contact

Name

Details

Toshiya Yamamoto

First name:	Toshiya
Last name:	Yamamoto
Institution:	National Institute of Fruit Tree Science, Graduate School of Life and Environmental Sciences, University of Tsukuba
Address:	National Institute of Fruit Tree Science, 2-1 Fujimoto, Tsukuba, Ibaraki 305-8605, Japan
Country:	Japan
Email:	toshiya@affrc.go.jp
Last update:	Apr 2014

Publications


Year	Publication
2014	Terakami S, Nishitani C, Kunihisa M, Shirasawa K, Sato S, Tabata S, Kurita K, Kanamori H, Katayose Y, Takada N, Saito T, Yamamoto T. Transcriptome-based single nucleotide polymorphism markers for genome mapping in Japanese pear (Pyrus pyrifolia Nakai). Tree genetics & genomes. 2014; 10(4):853-863.

Map Positions


#	Map Name	Linkage Group	Bin	Position	Locus	MapViewer
1	Pear-integrated_consensus_map-IPCG-2017	LG13	N/A	7.03	JPsnpHou00206	View

Sequence

>JPsnpHou00206 ID=JPsnpHou00206; Name=JPsnpHou00206; organism=Pyrus pyrifolia; type=genetic_marker; length=872bp
GAGAATTTGGTTTGAAGAAGTTCCGAGAGTTTGGTTTTGTTGAAGATGCA
GGGTGATCGAATTCAGGGGTCTCCTTCTTATTACAGTGTTCTTGGTGTCG
GCTCGGAGTCTTCCGTGGAAGAGATAAGGCGTGCATATCGCAAGCTAGCG
ATGAAATGGCATCCGGACAGGTGGACAAGAACCCCTTCTTTGTTGGGTGA
AGCCAAGCGGAAATTCCAGCAAATTCAAGAAGCCTATTCAGTGTTATCAG
ACCAGAGAAAACGAAGTATGTACGATGTTGGCCTGTACGATCCCGATGAC
GACGAAGAGGACGAGGGGTTCAGTGATTTTGTGCAAGAAATGGTGTCTCT
GATGGCGGAATCCAGAAGAGAGGCAAAGAGTTATACCATGGAGGAyCTGC
AAGCAATGTTCATGGAGATGGTCAAAGGATTCGAGACTCCTCCTTCCTCT
TTCTTCTGTGGACAACCGGGGGCTTTCGAACAATCTGGATGCTTGAAAAG
AACGCGTCTCGAATCTAATTCCTGGATTGGCAGAGATTCAGGTGCCGGTT
CATCTCTCCATGTACCAAACTTGGGGAnGTACGGTGAGGGGTTCTTTACA
TTTTAGTAGCAAGGACAAAGACGATAAGAAAATTCTGGAAGGACAAAGAT
GATAAGAATTCTTTCGAGTGTTTGATTTCTTTTGCGGTCCTTCCACAGCG
GGTTGTGTGTCCTCTTTCACTTGTTTTTTGGAGACCACATGTATATAGAA
AGGCAAGTAGATGAAAGATTGCACGTCTTCTCTTTGTTGTTGTGTACTCA
TCTTATAACTTGTAGGCTGTGAATTTGGGCAAATAAAAAAAAAAAANAAA
ATAGAGACTCGACGAACGACAC