JPsnpHou00150, JPsnpHou00150 (genetic_marker) Pyrus pyrifolia

Marker Overview


Name	JPsnpHou00150
dbSNP ID	N/A
Type	SNP
SNP Alleles	A/T
5' Flanking Sequence	GCCAACAACTGTGGATTCTTTGGAAGTCCAGCAACCATGAATTTGTGTTCCAAGTGCCAC AAGGACTTGGTGTTGAAGCAAGAACAAGCTAAAGTCGTTGCGGCATCCATTGATAGTGCG GTGAATGGCAACCCCTCTGAAAGTGGGAAGGGGCCTGTTGCTACTGCTGCTGTAGATGTA CAAGCTGGCCCCGCAGGTGTGATGCTTATCTCAACACAGGCATCCTCTACTCCATCTTTG AACATTAAGAGGGAGGAGAAGGTGAAAGAGACTCCTACCAGGTGCGGCACTTGCAGGAAA CGTGTTGGTCTAACTGGGTTCAGTTGCCGATGTGGAGATCTCTTTTGTGCAGTTCATCGG TACTCTGATAAACACAACTGCCCTT
3' Flanking Sequence	TGATTACCGGACTGCTGCTCAGGATGCAATAGCCAAAGCCAACCCGGTTGTCAAGGCGGA AAAGCTGGATAAAATCTGATAAAAGTCTTGGAATTACGAGGGTTTAATCTTTTCATGTAT TGCACACATGCTCTCATTTCTACCCATGTGGCTTCTGCTTCTGTTTGAGTTGATCTTGTT ATGTTAGGTCTCGTGTGTGATAGATGGTTGGAAGCTGTTGTGGGCATTTTCAAATGTCAG GAACGATTGTGTGTAATAATCCCAGCCGTTCGTGAGGGCCGTGAGGCCGTCACGAGGCTT TGGTACCGATGGTGTTTTGGACCTTGTTTATTTTGCTTGTTTGGGATGTAGCTTGTCAGA TATAGGAAGGTGCCAAGGTAGGTAGCATGCTCGAGTAATTCAGGATAATGCTCATAACTA AGGTTTTCCCCATGTGTTACTTGGGGTGGGGAAGTTGGAATCGAACTCGGGACCTCAAGG TGGAAATGTGAATGTTTTTAG
Species	Pyrus pyrifolia
Publication	[view all]
Contact	Toshiya Yamamoto
Comment	SNP position in sequence: 386

Contact

Name

Details

Toshiya Yamamoto

First name:	Toshiya
Last name:	Yamamoto
Institution:	National Institute of Fruit Tree Science, Graduate School of Life and Environmental Sciences, University of Tsukuba
Address:	National Institute of Fruit Tree Science, 2-1 Fujimoto, Tsukuba, Ibaraki 305-8605, Japan
Country:	Japan
Email:	toshiya@affrc.go.jp
Last update:	Apr 2014

Publications


Year	Publication
2014	Terakami S, Nishitani C, Kunihisa M, Shirasawa K, Sato S, Tabata S, Kurita K, Kanamori H, Katayose Y, Takada N, Saito T, Yamamoto T. Transcriptome-based single nucleotide polymorphism markers for genome mapping in Japanese pear (Pyrus pyrifolia Nakai). Tree genetics & genomes. 2014; 10(4):853-863.

Map Positions


#	Map Name	Linkage Group	Bin	Position	Locus	MapViewer
1	Pear-integrated_consensus_map-IPCG-2017	LG2	N/A	161.34	JPsnpHou00150	View

Sequence

>JPsnpHou00150 ID=JPsnpHou00150; Name=JPsnpHou00150; organism=Pyrus pyrifolia; type=genetic_marker; length=887bp
GCCAACAACTGTGGATTCTTTGGAAGTCCAGCAACCATGAATTTGTGTTC
CAAGTGCCACAAGGACTTGGTGTTGAAGCAAGAACAAGCTAAAGTCGTTG
CGGCATCCATTGATAGTGCGGTGAATGGCAACCCCTCTGAAAGTGGGAAG
GGGCCTGTTGCTACTGCTGCTGTAGATGTACAAGCTGGCCCCGCAGGTGT
GATGCTTATCTCAACACAGGCATCCTCTACTCCATCTTTGAACATTAAGA
GGGAGGAGAAGGTGAAAGAGACTCCTACCAGGTGCGGCACTTGCAGGAAA
CGTGTTGGTCTAACTGGGTTCAGTTGCCGATGTGGAGATCTCTTTTGTGC
AGTTCATCGGTACTCTGATAAACACAACTGCCCTTwTGATTACCGGACTG
CTGCTCAGGATGCAATAGCCAAAGCCAACCCGGTTGTCAAGGCGGAAAAG
CTGGATAAAATCTGATAAAAGTCTTGGAATTACGAGGGTTTAATCTTTTC
ATGTATTGCACACATGCTCTCATTTCTACCCATGTGGCTTCTGCTTCTGT
TTGAGTTGATCTTGTTATGTTAGGTCTCGTGTGTGATAGATGGTTGGAAG
CTGTTGTGGGCATTTTCAAATGTCAGGAACGATTGTGTGTAATAATCCCA
GCCGTTCGTGAGGGCCGTGAGGCCGTCACGAGGCTTTGGTACCGATGGTG
TTTTGGACCTTGTTTATTTTGCTTGTTTGGGATGTAGCTTGTCAGATATA
GGAAGGTGCCAAGGTAGGTAGCATGCTCGAGTAATTCAGGATAATGCTCA
TAACTAAGGTTTTCCCCATGTGTTACTTGGGGTGGGGAAGTTGGAATCGA
ACTCGGGACCTCAAGGTGGAAATGTGAATGTTTTTAG