JPsnpHou00296, JPsnpHou00296 (genetic_marker) Pyrus pyrifolia

Marker Overview


Name	JPsnpHou00296
dbSNP ID	N/A
Type	SNP
SNP Alleles	A/C
5' Flanking Sequence	GGAGAAGCAGAGCTGAAATCCTTGAGCAATACCTTCCTGACCACAATGAGAGCATGTCCG TTGTCCTTGAGAAGTTTGCTGACATGGGCATTGACACCCCCGGTTTAGTCGCCCTTCTAG GAGCTCACAGTGTTGGAAGAACACATTGTGTGAAGCTGGTGCACCGGTTGTACCCAGAAG TTGACCCTCAGCTCAACCCTGACCATGTCCCTCACATGCTCAAGAAGTGCCCTGATGCAA TCCCCGACCCCAAAGCCGTTCAATACGTGAGAAATGACCGTGGTACCCCCATGATCTTCG ATAATAACTACTACAGAAACATCTTGGACAACAAGGGTTTGATGATGGTGGATCACCAGC TAGCCACAGACAAGAGGACAAAACC
3' Flanking Sequence	TACGTCAAGAAAATGGCCAAGAGCCAAGACTACTTCTTCAAGGAGTTTTCGAGAGCCTTC ACCATTCTCTCCGAGAACAACCCTCTCACCGGAAACAAGGGCGAGATCCGACAGCAGTGC AATGTTGCCAATAAAATCCGGGACTAGAGCAAAAAGCAGCTTTGTCAGGAAGCACTTTTC TTCTTAGTTATGTAATTAGTGGAGAAAATGTGTGTGGGACAAGTTGCTGGATAATAAAAG GGGTTTTTATTTAATTTTATTTTATAACCAATATGTTTGTTTGTTTTCATGGAAGTTGGT CAGTGCTAGGGTTAAAAGGCATGCATGTGGTCAGTTGTTCAAGTGGCCCTTGTTCATGAT GCACTGTGTCTGATTTAGGGTTTCCGAATTTTATCTTTTTGGCTTTCTTCTCTTTGGGTG AGATGGGCATGGTGGATATGTCGGGATGTGTGTATGTATGGATGGATGGTTTGAACTTTG AACATGTATGCTG
Species	Pyrus pyrifolia
Publication	[view all]
Contact	Toshiya Yamamoto
Comment	SNP position in sequence: 386

Contact

Name

Details

Toshiya Yamamoto

First name:	Toshiya
Last name:	Yamamoto
Institution:	National Institute of Fruit Tree Science, Graduate School of Life and Environmental Sciences, University of Tsukuba
Address:	National Institute of Fruit Tree Science, 2-1 Fujimoto, Tsukuba, Ibaraki 305-8605, Japan
Country:	Japan
Email:	toshiya@affrc.go.jp
Last update:	Apr 2014

Publications


Year	Publication
2014	Terakami S, Nishitani C, Kunihisa M, Shirasawa K, Sato S, Tabata S, Kurita K, Kanamori H, Katayose Y, Takada N, Saito T, Yamamoto T. Transcriptome-based single nucleotide polymorphism markers for genome mapping in Japanese pear (Pyrus pyrifolia Nakai). Tree genetics & genomes. 2014; 10(4):853-863.

Map Positions


#	Map Name	Linkage Group	Bin	Position	Locus	MapViewer
1	Pear-integrated_consensus_map-IPCG-2017	LG10	N/A	208.8	JPsnpHou00296	View

Sequence

>JPsnpHou00296 ID=JPsnpHou00296; Name=JPsnpHou00296; organism=Pyrus pyrifolia; type=genetic_marker; length=879bp
GGAGAAGCAGAGCTGAAATCCTTGAGCAATACCTTCCTGACCACAATGAG
AGCATGTCCGTTGTCCTTGAGAAGTTTGCTGACATGGGCATTGACACCCC
CGGTTTAGTCGCCCTTCTAGGAGCTCACAGTGTTGGAAGAACACATTGTG
TGAAGCTGGTGCACCGGTTGTACCCAGAAGTTGACCCTCAGCTCAACCCT
GACCATGTCCCTCACATGCTCAAGAAGTGCCCTGATGCAATCCCCGACCC
CAAAGCCGTTCAATACGTGAGAAATGACCGTGGTACCCCCATGATCTTCG
ATAATAACTACTACAGAAACATCTTGGACAACAAGGGTTTGATGATGGTG
GATCACCAGCTAGCCACAGACAAGAGGACAAAACCmTACGTCAAGAAAAT
GGCCAAGAGCCAAGACTACTTCTTCAAGGAGTTTTCGAGAGCCTTCACCA
TTCTCTCCGAGAACAACCCTCTCACCGGAAACAAGGGCGAGATCCGACAG
CAGTGCAATGTTGCCAATAAAATCCGGGACTAGAGCAAAAAGCAGCTTTG
TCAGGAAGCACTTTTCTTCTTAGTTATGTAATTAGTGGAGAAAATGTGTG
TGGGACAAGTTGCTGGATAATAAAAGGGGTTTTTATTTAATTTTATTTTA
TAACCAATATGTTTGTTTGTTTTCATGGAAGTTGGTCAGTGCTAGGGTTA
AAAGGCATGCATGTGGTCAGTTGTTCAAGTGGCCCTTGTTCATGATGCAC
TGTGTCTGATTTAGGGTTTCCGAATTTTATCTTTTTGGCTTTCTTCTCTT
TGGGTGAGATGGGCATGGTGGATATGTCGGGATGTGTGTATGTATGGATG
GATGGTTTGAACTTTGAACATGTATGCTG