JPsnpHou00061, JPsnpHou00061 (genetic_marker) Pyrus pyrifolia

Marker Overview


Name	JPsnpHou00061
dbSNP ID	N/A
Type	SNP
SNP Alleles	T/G
5' Flanking Sequence	CATAAACCCTAACCTAACTTCTTGATTTTCCATAGAGAGAGCAATTAAGCTGAAATCGTA AAAACTCGATACAACCCAGTATGGACAAGAGCATGATAGGAGATCTGGATTCGCTTCCAG AGGAAGATAAGATGAGAATGGCCACCATGATCGACCAGCTCCAGATCCGCGACAGTTTGA GAATGTACAACTCACTTGTTGAGAGATGCTTCAATGATTGTGTAGACACCTTTAAGCACA AATCGCTGCAGAAGCAAGAGGAAACCTGTGTGAGGCGATGTGCTGAGAAGTTCCTAAAGC ATTCCATGCGTGTTGGCATGAGGTTTGCAGAGCTCAACCAGGGAGCTGCAACACAAGATT AGTCATCAAATCAGCAAGATCAC
3' Flanking Sequence	CCCGGTCATGCCCGTCTTACCCTGTTGTTTTCTTGCTTTCTTAGAGAATGTCCCCCCGTT CTTACATAAACAGGACAAATGGTAGTTGTACCCATTTTTCATGATTTCACTTTTCTTAAC CAAGCTAAAACAGCAAAATTGTATTGTGTAGATGCAAGGGATCCGTAAGTTGCTGTCTGA TTAGAGTTTTTACTGTTACTAATTCAAGCAGCATAGCAATCCTTGAATTCCTCAATGTGA TCAATAAATTAATTGTTTTAATGAATGGGCCATAACCTTTAACTT
Species	Pyrus pyrifolia
Publication	[view all]
Contact	Toshiya Yamamoto
Comment	SNP position in sequence: 384

Contact

Name

Details

Toshiya Yamamoto

First name:	Toshiya
Last name:	Yamamoto
Institution:	National Institute of Fruit Tree Science, Graduate School of Life and Environmental Sciences, University of Tsukuba
Address:	National Institute of Fruit Tree Science, 2-1 Fujimoto, Tsukuba, Ibaraki 305-8605, Japan
Country:	Japan
Email:	toshiya@affrc.go.jp
Last update:	Apr 2014

Publications


Year	Publication
2014	Terakami S, Nishitani C, Kunihisa M, Shirasawa K, Sato S, Tabata S, Kurita K, Kanamori H, Katayose Y, Takada N, Saito T, Yamamoto T. Transcriptome-based single nucleotide polymorphism markers for genome mapping in Japanese pear (Pyrus pyrifolia Nakai). Tree genetics & genomes. 2014; 10(4):853-863.

Map Positions


#	Map Name	Linkage Group	Bin	Position	Locus	MapViewer
1	Pear-integrated_consensus_map-IPCG-2017	LG11	N/A	61.56	JPsnpHou00061	View

Sequence

>JPsnpHou00061 ID=JPsnpHou00061; Name=JPsnpHou00061; organism=Pyrus pyrifolia; type=genetic_marker; length=669bp
CATAAACCCTAACCTAACTTCTTGATTTTCCATAGAGAGAGCAATTAAGC
TGAAATCGTAAAAACTCGATACAACCCAGTATGGACAAGAGCATGATAGG
AGATCTGGATTCGCTTCCAGAGGAAGATAAGATGAGAATGGCCACCATGA
TCGACCAGCTCCAGATCCGCGACAGTTTGAGAATGTACAACTCACTTGTT
GAGAGATGCTTCAATGATTGTGTAGACACCTTTAAGCACAAATCGCTGCA
GAAGCAAGAGGAAACCTGTGTGAGGCGATGTGCTGAGAAGTTCCTAAAGC
ATTCCATGCGTGTTGGCATGAGGTTTGCAGAGCTCAACCAGGGAGCTGCA
ACACAAGATTAGTCATCAAATCAGCAAGATCACkCCCGGTCATGCCCGTC
TTACCCTGTTGTTTTCTTGCTTTCTTAGAGAATGTCCCCCCGTTCTTACA
TAAACAGGACAAATGGTAGTTGTACCCATTTTTCATGATTTCACTTTTCT
TAACCAAGCTAAAACAGCAAAATTGTATTGTGTAGATGCAAGGGATCCGT
AAGTTGCTGTCTGATTAGAGTTTTTACTGTTACTAATTCAAGCAGCATAG
CAATCCTTGAATTCCTCAATGTGATCAATAAATTAATTGTTTTAATGAAT
GGGCCATAACCTTTAACTT