JPsnpHou00172, JPsnpHou00172 (genetic_marker) Pyrus pyrifolia

Marker Overview


Name	JPsnpHou00172
dbSNP ID	N/A
Type	SNP
SNP Alleles	A/G
5' Flanking Sequence	CTTGCTTAAGTATGGAGTTAAGGGGCATCTTCTTAATGCTGGAATATGCCAACTTTGCAA AGGAGATGTAGTTGCAATCACCAATGCATTAGAGCGATATCAGGATTTAGATCCTACTTT TTCAGGAACAAGGGAGTACAGGTTCTTAGCGGATATTGCCGCTGCAGTTGATGAGGAAGA CATTGCGAAGTTCACTGACGTGGTCAAGGAATTTGATAGTATGACCCCACTGGATGCATG GAAGACAACCTTACTGCTGAGAGTGAAGGAAAAGCTGAAGTCCAAGGAACTTGAGGAGGA CGATCTTACCTAAGGTGAAAAATAATGAAATGATGTTTGTTTGGTTTGTCCATTTGTTTG TGAAGATTGTGTTTTGTTTATC
3' Flanking Sequence	TGCGTACATCATTCCTTTACACTTCATTGAGAATGTGTTGGAACTGAATTGTAGTTGATT TGGGATTTAATCCGTGCGTTTTCGACTTTAATCGATCTTTGTGAGTCCGTGGGATTGTAT GTATATTCAAACCACTGTATGAATTGGCCTTGCTTCGAAAATGTATGGGGTTCTATTCTG CCGTTAT
Species	Pyrus pyrifolia
Publication	[view all]
Contact	Toshiya Yamamoto
Comment	SNP position in sequence: 383

Contact

Name

Details

Toshiya Yamamoto

First name:	Toshiya
Last name:	Yamamoto
Institution:	National Institute of Fruit Tree Science, Graduate School of Life and Environmental Sciences, University of Tsukuba
Address:	National Institute of Fruit Tree Science, 2-1 Fujimoto, Tsukuba, Ibaraki 305-8605, Japan
Country:	Japan
Email:	toshiya@affrc.go.jp
Last update:	Apr 2014

Publications


Year	Publication
2014	Terakami S, Nishitani C, Kunihisa M, Shirasawa K, Sato S, Tabata S, Kurita K, Kanamori H, Katayose Y, Takada N, Saito T, Yamamoto T. Transcriptome-based single nucleotide polymorphism markers for genome mapping in Japanese pear (Pyrus pyrifolia Nakai). Tree genetics & genomes. 2014; 10(4):853-863.

Map Positions


#	Map Name	Linkage Group	Bin	Position	Locus	MapViewer
1	Pear-integrated_consensus_map-IPCG-2017	LG7	N/A	64.73	JPsnpHou00172	View

Sequence

>JPsnpHou00172 ID=JPsnpHou00172; Name=JPsnpHou00172; organism=Pyrus pyrifolia; type=genetic_marker; length=570bp
CTTGCTTAAGTATGGAGTTAAGGGGCATCTTCTTAATGCTGGAATATGCC
AACTTTGCAAAGGAGATGTAGTTGCAATCACCAATGCATTAGAGCGATAT
CAGGATTTAGATCCTACTTTTTCAGGAACAAGGGAGTACAGGTTCTTAGC
GGATATTGCCGCTGCAGTTGATGAGGAAGACATTGCGAAGTTCACTGACG
TGGTCAAGGAATTTGATAGTATGACCCCACTGGATGCATGGAAGACAACC
TTACTGCTGAGAGTGAAGGAAAAGCTGAAGTCCAAGGAACTTGAGGAGGA
CGATCTTACCTAAGGTGAAAAATAATGAAATGATGTTTGTTTGGTTTGTC
CATTTGTTTGTGAAGATTGTGTTTTGTTTATCrTGCGTACATCATTCCTT
TACACTTCATTGAGAATGTGTTGGAACTGAATTGTAGTTGATTTGGGATT
TAATCCGTGCGTTTTCGACTTTAATCGATCTTTGTGAGTCCGTGGGATTG
TATGTATATTCAAACCACTGTATGAATTGGCCTTGCTTCGAAAATGTATG
GGGTTCTATTCTGCCGTTAT