JPsnpHou00334, JPsnpHou00334 (genetic_marker) Pyrus pyrifolia

Marker Overview


Name	JPsnpHou00334
dbSNP ID	N/A
Type	SNP
SNP Alleles	A/G
5' Flanking Sequence	CTGAAGCTTCATACCTGAGCCAACAGGGAAGATGTCGAATGTGGGAACTTCGAAGGGACT TCTGGAGATCGGAAAATTTGGCCTGTACGTCTCCATCCCCATCGTTCTTATGTACTCCTT CGCCAACAACTCCAAGAATCTCCAGAGATTCATGGGCAATCATTCGTATGTAGTATATCC ACCAGAGGCACCGAGACCTCCATCACCGGAGGAAATGAGGGAGATGGCACGAGAGCTAGC TCGGAACAAGGCTGGCCGTTGAGGCTTTTGCTGCCTCTGTTGTAACTTGTAAGTGCCTTG CTGCTATAGAGAAATGCTATATTTGTATTTGGATTTGTGTTTAAATAAATGGCGAGGCAG AGGGGTTAGTAAGTGGATTA
3' Flanking Sequence	CTGTTCGAATACACGTATGAACTTGTAATGTTGGTGATGGGGTTTGGCCTCCTCCGTTTC GGTTTGAAAAATAAGAAACTTGAATGAGCTTTGTGACTGGGGATGTGATGTAATACCGTA AGAGCATGAATGGAATGGAACCACTACTTGTTGCTTTCAATGATTTGATTTCGTTATTGG CGATGTTATCGACCAAGTATCAACCATGCCCGTGTACTACTAACTGTAGCTGAGGTTGAG CTTGAATGTAGTTTCAGATGGTTGGACTTGTCTCTCCTTTACTGTTGTGTTGATTCCATG CTTTACTGGTCTGATCCA
Species	Pyrus pyrifolia
Publication	[view all]
Contact	Toshiya Yamamoto
Comment	SNP position in sequence: 381

Contact

Name

Details

Toshiya Yamamoto

First name:	Toshiya
Last name:	Yamamoto
Institution:	National Institute of Fruit Tree Science, Graduate School of Life and Environmental Sciences, University of Tsukuba
Address:	National Institute of Fruit Tree Science, 2-1 Fujimoto, Tsukuba, Ibaraki 305-8605, Japan
Country:	Japan
Email:	toshiya@affrc.go.jp
Last update:	Apr 2014

Publications


Year	Publication
2014	Terakami S, Nishitani C, Kunihisa M, Shirasawa K, Sato S, Tabata S, Kurita K, Kanamori H, Katayose Y, Takada N, Saito T, Yamamoto T. Transcriptome-based single nucleotide polymorphism markers for genome mapping in Japanese pear (Pyrus pyrifolia Nakai). Tree genetics & genomes. 2014; 10(4):853-863.

Map Positions


#	Map Name	Linkage Group	Bin	Position	Locus	MapViewer
1	Pear-integrated_consensus_map-IPCG-2017	LG13	N/A	128.36	JPsnpHou00334	View

Sequence

>JPsnpHou00334 ID=JPsnpHou00334; Name=JPsnpHou00334; organism=Pyrus pyrifolia; type=genetic_marker; length=699bp
CTGAAGCTTCATACCTGAGCCAACAGGGAAGATGTCGAATGTGGGAACTT
CGAAGGGACTTCTGGAGATCGGAAAATTTGGCCTGTACGTCTCCATCCCC
ATCGTTCTTATGTACTCCTTCGCCAACAACTCCAAGAATCTCCAGAGATT
CATGGGCAATCATTCGTATGTAGTATATCCACCAGAGGCACCGAGACCTC
CATCACCGGAGGAAATGAGGGAGATGGCACGAGAGCTAGCTCGGAACAAG
GCTGGCCGTTGAGGCTTTTGCTGCCTCTGTTGTAACTTGTAAGTGCCTTG
CTGCTATAGAGAAATGCTATATTTGTATTTGGATTTGTGTTTAAATAAAT
GGCGAGGCAGAGGGGTTAGTAAGTGGATTArCTGTTCGAATACACGTATG
AACTTGTAATGTTGGTGATGGGGTTTGGCCTCCTCCGTTTCGGTTTGAAA
AATAAGAAACTTGAATGAGCTTTGTGACTGGGGATGTGATGTAATACCGT
AAGAGCATGAATGGAATGGAACCACTACTTGTTGCTTTCAATGATTTGAT
TTCGTTATTGGCGATGTTATCGACCAAGTATCAACCATGCCCGTGTACTA
CTAACTGTAGCTGAGGTTGAGCTTGAATGTAGTTTCAGATGGTTGGACTT
GTCTCTCCTTTACTGTTGTGTTGATTCCATGCTTTACTGGTCTGATCCA