JPsnpHou00316, JPsnpHou00316 (genetic_marker) Pyrus pyrifolia

Marker Overview


Name	JPsnpHou00316
dbSNP ID	N/A
Type	SNP
SNP Alleles	T/C
5' Flanking Sequence	TTGATGCATCGACACGATGGTCACATGTTTGCTTGTTGTCCACATGTAACACTGCAGTTA CAGAACTCGTAGCACAAATTATAAGTTAAGGCCTCACCACCCTGATTATCCGATCAAGTC GAGTCTACTGGATAACAATGGAGAGTTTACGTCACAGACTTTTGACAATTATTGCATTCA GTAGGGATTGATGTGGAACATCTTGTACCTCATATTCACACCCAAAACGGCTTGGCAGAA GCTTTCGTAAAGCGCCTTCAATTGATAGCTCGAACTTTGGTTATGCAAACCAAATTGTCG GTATCTACCGGAGGCTATACAATATTGCACACAACTATGCCGGTTTGCCTAAGGCCCACC GCTACCTAACCTCATTCAT
3' Flanking Sequence	GTTACAnTTGGTTACTAGATGCGAGCCTAACGTCTCGTATTTATGTGTGTTTGGGTGAAC AGTTTATGTGCCCATAGCGCTGCTACTACGTCCCAAAATGGATCATCAAAGAAAAATGGG AATCTATGTCGGTTATGATTCGTCATCAATTGTTCACTATTTAGAACCCTTGACAAGAGA TCTCTTTACCACACGTTTTTTGAATTGTCACTTTGATGAGACAATCTTCCCGTCGTTAAG GGGAGATAAGCATGCTAATGTTCCTGGAGTACACCGCGAATTGTCTTGGTATGCTCCCAC TATGTCTCATTTAGATCCCCGTACTACCCAGTATAAAACTAAGGTGCAATAAATTATATA TCTTCAAAGCATTGCTCAGAGCATGCTAGGTGCTTTTAATGAACTAGCTAAGGTGACAAG ATCACATATACCTACTGCAAATGCACCTGTAAGATAAATGTACCCTGCGTACATCACAAT CCTG
Species	Pyrus pyrifolia
Publication	[view all]
Contact	Toshiya Yamamoto
Comment	SNP position in sequence: 380

Contact

Name

Details

Toshiya Yamamoto

First name:	Toshiya
Last name:	Yamamoto
Institution:	National Institute of Fruit Tree Science, Graduate School of Life and Environmental Sciences, University of Tsukuba
Address:	National Institute of Fruit Tree Science, 2-1 Fujimoto, Tsukuba, Ibaraki 305-8605, Japan
Country:	Japan
Email:	toshiya@affrc.go.jp
Last update:	Apr 2014

Publications


Year	Publication
2014	Terakami S, Nishitani C, Kunihisa M, Shirasawa K, Sato S, Tabata S, Kurita K, Kanamori H, Katayose Y, Takada N, Saito T, Yamamoto T. Transcriptome-based single nucleotide polymorphism markers for genome mapping in Japanese pear (Pyrus pyrifolia Nakai). Tree genetics & genomes. 2014; 10(4):853-863.

Map Positions


#	Map Name	Linkage Group	Bin	Position	Locus	MapViewer
1	Pear-integrated_consensus_map-IPCG-2017	LG6	N/A	57.08	JPsnpHou00316	View

Sequence

>JPsnpHou00316 ID=JPsnpHou00316; Name=JPsnpHou00316; organism=Pyrus pyrifolia; type=genetic_marker; length=864bp
TTGATGCATCGACACGATGGTCACATGTTTGCTTGTTGTCCACATGTAAC
ACTGCAGTTACAGAACTCGTAGCACAAATTATAAGTTAAGGCCTCACCAC
CCTGATTATCCGATCAAGTCGAGTCTACTGGATAACAATGGAGAGTTTAC
GTCACAGACTTTTGACAATTATTGCATTCAGTAGGGATTGATGTGGAACA
TCTTGTACCTCATATTCACACCCAAAACGGCTTGGCAGAAGCTTTCGTAA
AGCGCCTTCAATTGATAGCTCGAACTTTGGTTATGCAAACCAAATTGTCG
GTATCTACCGGAGGCTATACAATATTGCACACAACTATGCCGGTTTGCCT
AAGGCCCACCGCTACCTAACCTCATTCATyGTTACAnTTGGTTACTAGAT
GCGAGCCTAACGTCTCGTATTTATGTGTGTTTGGGTGAACAGTTTATGTG
CCCATAGCGCTGCTACTACGTCCCAAAATGGATCATCAAAGAAAAATGGG
AATCTATGTCGGTTATGATTCGTCATCAATTGTTCACTATTTAGAACCCT
TGACAAGAGATCTCTTTACCACACGTTTTTTGAATTGTCACTTTGATGAG
ACAATCTTCCCGTCGTTAAGGGGAGATAAGCATGCTAATGTTCCTGGAGT
ACACCGCGAATTGTCTTGGTATGCTCCCACTATGTCTCATTTAGATCCCC
GTACTACCCAGTATAAAACTAAGGTGCAATAAATTATATATCTTCAAAGC
ATTGCTCAGAGCATGCTAGGTGCTTTTAATGAACTAGCTAAGGTGACAAG
ATCACATATACCTACTGCAAATGCACCTGTAAGATAAATGTACCCTGCGT
ACATCACAATCCTG