JPsnpHou00492, JPsnpHou00492 (genetic_marker) Pyrus pyrifolia

Marker Overview


Name	JPsnpHou00492
dbSNP ID	N/A
Type	SNP
SNP Alleles	A/G
5' Flanking Sequence	CTTTCTCTCTCTAAGCGCAGAGAAATCAAGATTCGTCAATGGGTTTGTGGGAAGCTTTTC TCAATTGGCTCCGCAGCCTCTTTTTCAAGCAGGAAATGGAACTATCTTTGATAGGACTTC AGAATGCTGGAAAGACTTCTCTTGTAAATGTTGTTGCAACGGGCGGATACAGTGAGGACA TGATTCCTACAGTAGGATTCAATATGAAGAAGGTAACCAAAGGGAATGTTACTATAAAGT TGTGGGATCTTGGAGGTCAACCCAGGTTCCGCAGCATGTGGGAGCGATACTGTCGTGCTG TTTCTGCCATAGTTTATGTTGTTGATGCTGCCGATCCAGATAACATGAGCGTCTCAAAAA GTGAGCTTCATGATTTGCT
3' Flanking Sequence	AGCAAAAACTCACTAAGCGGGATCCCACTACTGGTCCTTGGAAATAAGATTGACAAGCCG GGAGCTCTCAGTAAACAGGCATTGACTGATGAAATGGGACTTAAGTCGATTACAGACAGA GAAGTTTGTTGCTTCATGATCTCATGCAAGAACTCAACGAACATCGATTCAGTTATCGAT TGGCTTGTAAAGCATTCCAAATCAAAAAGCTGAGAGATGGTTTTGCTTCTCTCTGCnTTT GnTTTTTCTGTGTGATATAATTTTTATTAAAGGATTCTTTGTGTACGGGGTGTTGGCGTT TGGGATTGACTTGTCTGATTAACTTGGTTGCTGA
Species	Pyrus pyrifolia
Publication	[view all]
Contact	Toshiya Yamamoto
Comment	SNP position in sequence: 380

Contact

Name

Details

Toshiya Yamamoto

First name:	Toshiya
Last name:	Yamamoto
Institution:	National Institute of Fruit Tree Science, Graduate School of Life and Environmental Sciences, University of Tsukuba
Address:	National Institute of Fruit Tree Science, 2-1 Fujimoto, Tsukuba, Ibaraki 305-8605, Japan
Country:	Japan
Email:	toshiya@affrc.go.jp
Last update:	Apr 2014

Publications


Year	Publication
2014	Terakami S, Nishitani C, Kunihisa M, Shirasawa K, Sato S, Tabata S, Kurita K, Kanamori H, Katayose Y, Takada N, Saito T, Yamamoto T. Transcriptome-based single nucleotide polymorphism markers for genome mapping in Japanese pear (Pyrus pyrifolia Nakai). Tree genetics & genomes. 2014; 10(4):853-863.

Map Positions


#	Map Name	Linkage Group	Bin	Position	Locus	MapViewer
1	Pear-integrated_consensus_map-IPCG-2017	LG15	N/A	133.24	JPsnpHou00492	View

Sequence

>JPsnpHou00492 ID=JPsnpHou00492; Name=JPsnpHou00492; organism=Pyrus pyrifolia; type=genetic_marker; length=714bp
CTTTCTCTCTCTAAGCGCAGAGAAATCAAGATTCGTCAATGGGTTTGTGG
GAAGCTTTTCTCAATTGGCTCCGCAGCCTCTTTTTCAAGCAGGAAATGGA
ACTATCTTTGATAGGACTTCAGAATGCTGGAAAGACTTCTCTTGTAAATG
TTGTTGCAACGGGCGGATACAGTGAGGACATGATTCCTACAGTAGGATTC
AATATGAAGAAGGTAACCAAAGGGAATGTTACTATAAAGTTGTGGGATCT
TGGAGGTCAACCCAGGTTCCGCAGCATGTGGGAGCGATACTGTCGTGCTG
TTTCTGCCATAGTTTATGTTGTTGATGCTGCCGATCCAGATAACATGAGC
GTCTCAAAAAGTGAGCTTCATGATTTGCTrAGCAAAAACTCACTAAGCGG
GATCCCACTACTGGTCCTTGGAAATAAGATTGACAAGCCGGGAGCTCTCA
GTAAACAGGCATTGACTGATGAAATGGGACTTAAGTCGATTACAGACAGA
GAAGTTTGTTGCTTCATGATCTCATGCAAGAACTCAACGAACATCGATTC
AGTTATCGATTGGCTTGTAAAGCATTCCAAATCAAAAAGCTGAGAGATGG
TTTTGCTTCTCTCTGCnTTTGnTTTTTCTGTGTGATATAATTTTTATTAA
AGGATTCTTTGTGTACGGGGTGTTGGCGTTTGGGATTGACTTGTCTGATT
AACTTGGTTGCTGA