JPsnpHou00484, JPsnpHou00484 (genetic_marker) Pyrus pyrifolia

Marker Overview


Name	JPsnpHou00484
dbSNP ID	N/A
Type	SNP
SNP Alleles	A/G
5' Flanking Sequence	AGGGTTAAGGCATCAACGAAACGATGTCGTCAGAGAGGAAGATAACTCTGAAGAGCTCGG ACGGCGAGACGTTCGAGGTGGACGAGGCGGTGGCTTTGATGTCTCAGACGATAAAGCACA TGGTGGAGGACGATTGTGCCGACAACGGGATCCCGCTGCCCAACGTCACCAGCAAGATCT TGGCGAAGGTCATCGAGTACTGCCGGAAGCACGTCGAGCCCGCTAAGCCCGAAGAACGCA CCTCCGTCGATGAAGACCTCAAGGCTTGGGACGCCGAATTCGTCAAGGTCGACCAGGCCA CGCTCTTCGATCTCATCCTGGCTGCGAATTATTTGAACATAAAGAGCTTGCTGGACCTGA CTTGCCAAACAGTGGC
3' Flanking Sequence	GACATGATCAAGGGAAAAACGCCCGAGGAGATTCGCAAGACGTTCAACATTAAGAACGAC TTTACGCCCGACGAAGAGGAGGAGGTCCGCAGGGAGAACCAATGGGCTTTCGAGTGAAGG GCCTGGGGATGAAGGAACCTGTTTTTATGGTTTGTTGCTCTTTACGAGCTGTGGTTGTGG AATGCTGTTTGTATCTGTTATCTGAAACGTTTCGTGACTTAGTGAAGTACCTTATTTGTA TGCAGACATCTGTTATTTTCCGCACTTCTAGCTCTTCTATACCTGCAATCTATGATGTTA TGTGGTTCTCTTTTGTTATGATAATATATTATGGTTCTCTTTTGTTATGATAATATATAT TAAACACGTGGTGCTTGTGAAATAAGGGAAAGATGATGCGTGTAAATCGTCGGTTTGTAA AATTCGAATAAATATGCTAATTGTATTTGTTCCTGCAGATCAAATGCATTAGCCTCCTTC ACA
Species	Pyrus pyrifolia
Publication	[view all]
Contact	Toshiya Yamamoto
Comment	SNP position in sequence: 377

Contact

Name

Details

Toshiya Yamamoto

First name:	Toshiya
Last name:	Yamamoto
Institution:	National Institute of Fruit Tree Science, Graduate School of Life and Environmental Sciences, University of Tsukuba
Address:	National Institute of Fruit Tree Science, 2-1 Fujimoto, Tsukuba, Ibaraki 305-8605, Japan
Country:	Japan
Email:	toshiya@affrc.go.jp
Last update:	Apr 2014

Publications


Year	Publication
2014	Terakami S, Nishitani C, Kunihisa M, Shirasawa K, Sato S, Tabata S, Kurita K, Kanamori H, Katayose Y, Takada N, Saito T, Yamamoto T. Transcriptome-based single nucleotide polymorphism markers for genome mapping in Japanese pear (Pyrus pyrifolia Nakai). Tree genetics & genomes. 2014; 10(4):853-863.

Map Positions


#	Map Name	Linkage Group	Bin	Position	Locus	MapViewer
1	Pear-integrated_consensus_map-IPCG-2017	LG8	N/A	25.1	JPsnpHou00484	View

Sequence

>JPsnpHou00484 ID=JPsnpHou00484; Name=JPsnpHou00484; organism=Pyrus pyrifolia; type=genetic_marker; length=860bp
AGGGTTAAGGCATCAACGAAACGATGTCGTCAGAGAGGAAGATAACTCTG
AAGAGCTCGGACGGCGAGACGTTCGAGGTGGACGAGGCGGTGGCTTTGAT
GTCTCAGACGATAAAGCACATGGTGGAGGACGATTGTGCCGACAACGGGA
TCCCGCTGCCCAACGTCACCAGCAAGATCTTGGCGAAGGTCATCGAGTAC
TGCCGGAAGCACGTCGAGCCCGCTAAGCCCGAAGAACGCACCTCCGTCGA
TGAAGACCTCAAGGCTTGGGACGCCGAATTCGTCAAGGTCGACCAGGCCA
CGCTCTTCGATCTCATCCTGGCTGCGAATTATTTGAACATAAAGAGCTTG
CTGGACCTGACTTGCCAAACAGTGGCrGACATGATCAAGGGAAAAACGCC
CGAGGAGATTCGCAAGACGTTCAACATTAAGAACGACTTTACGCCCGACG
AAGAGGAGGAGGTCCGCAGGGAGAACCAATGGGCTTTCGAGTGAAGGGCC
TGGGGATGAAGGAACCTGTTTTTATGGTTTGTTGCTCTTTACGAGCTGTG
GTTGTGGAATGCTGTTTGTATCTGTTATCTGAAACGTTTCGTGACTTAGT
GAAGTACCTTATTTGTATGCAGACATCTGTTATTTTCCGCACTTCTAGCT
CTTCTATACCTGCAATCTATGATGTTATGTGGTTCTCTTTTGTTATGATA
ATATATTATGGTTCTCTTTTGTTATGATAATATATATTAAACACGTGGTG
CTTGTGAAATAAGGGAAAGATGATGCGTGTAAATCGTCGGTTTGTAAAAT
TCGAATAAATATGCTAATTGTATTTGTTCCTGCAGATCAAATGCATTAGC
CTCCTTCACA