JPsnpHou00595, JPsnpHou00595 (genetic_marker) Pyrus pyrifolia

Marker Overview


Name	JPsnpHou00595
dbSNP ID	N/A
Type	SNP
SNP Alleles	A/G
5' Flanking Sequence	CTGAGACAGATAAAGCTTTTGGTTGGGTTCTTGAAATGTATGCTTATGCTGTTGCATCTG CTCACCATGGGGTTGGTAATATCTTATACAAGGACTTCATGCTTCAGCCTCCGTGGGATA AAAAAATTGGCAAGAAGTTCATAATTCATTACACTTATGGATGTGACTATAATATGAAGG GTGAACTAACATATGGGAAAATTGGAGAATGGAGATTTGATAAAAGGTCTTATGATACTG TCGCACCGCCTAGAAACCTTACTATGCCTCCACATGGTGTTCCAGAAAGTGTGGTGACCC TGGTGAAAATGGTGAATGAAGCCACAGCAAACATTCCCAATTGGGGGGAATAGGTAAAAG AGCTGGTTGGAGCTG
3' Flanking Sequence	TGTAGACACTGAGTCTGTATATAACAAAGCTGCGCCGCCTTTTGGTACAGATGCCACTTA CAGAAAAGTTGGTGAnAATTGTCATGTCTCGCTAATCAACTTGGGTTGCACACGTnGTGT CATACACTTGAATTCAGTTGTTCGTATGACCAAATTATACAAACATGAACACGAATTCAT TTTGTGAATGATTAAGTTACATGTATAGGTAATGCACGAGCTTGGACAGAGCTGTTGAGT CATTTGATGATCGAATACGAAAATGACTACATTTGCTTTCTCCTACCTATGAATTT
Species	Pyrus pyrifolia
Publication	[view all]
Contact	Toshiya Yamamoto
Comment	SNP position in sequence: 376

Contact

Name

Details

Toshiya Yamamoto

First name:	Toshiya
Last name:	Yamamoto
Institution:	National Institute of Fruit Tree Science, Graduate School of Life and Environmental Sciences, University of Tsukuba
Address:	National Institute of Fruit Tree Science, 2-1 Fujimoto, Tsukuba, Ibaraki 305-8605, Japan
Country:	Japan
Email:	toshiya@affrc.go.jp
Last update:	Apr 2014

Publications


Year	Publication
2014	Terakami S, Nishitani C, Kunihisa M, Shirasawa K, Sato S, Tabata S, Kurita K, Kanamori H, Katayose Y, Takada N, Saito T, Yamamoto T. Transcriptome-based single nucleotide polymorphism markers for genome mapping in Japanese pear (Pyrus pyrifolia Nakai). Tree genetics & genomes. 2014; 10(4):853-863.

Map Positions


#	Map Name	Linkage Group	Bin	Position	Locus	MapViewer
1	Pear-integrated_consensus_map-IPCG-2017	LG8	N/A	115.65	JPsnpHou00595	View

Sequence

>JPsnpHou00595 ID=JPsnpHou00595; Name=JPsnpHou00595; organism=Pyrus pyrifolia; type=genetic_marker; length=672bp
CTGAGACAGATAAAGCTTTTGGTTGGGTTCTTGAAATGTATGCTTATGCT
GTTGCATCTGCTCACCATGGGGTTGGTAATATCTTATACAAGGACTTCAT
GCTTCAGCCTCCGTGGGATAAAAAAATTGGCAAGAAGTTCATAATTCATT
ACACTTATGGATGTGACTATAATATGAAGGGTGAACTAACATATGGGAAA
ATTGGAGAATGGAGATTTGATAAAAGGTCTTATGATACTGTCGCACCGCC
TAGAAACCTTACTATGCCTCCACATGGTGTTCCAGAAAGTGTGGTGACCC
TGGTGAAAATGGTGAATGAAGCCACAGCAAACATTCCCAATTGGGGGGAA
TAGGTAAAAGAGCTGGTTGGAGCTGrTGTAGACACTGAGTCTGTATATAA
CAAAGCTGCGCCGCCTTTTGGTACAGATGCCACTTACAGAAAAGTTGGTG
AnAATTGTCATGTCTCGCTAATCAACTTGGGTTGCACACGTnGTGTCATA
CACTTGAATTCAGTTGTTCGTATGACCAAATTATACAAACATGAACACGA
ATTCATTTTGTGAATGATTAAGTTACATGTATAGGTAATGCACGAGCTTG
GACAGAGCTGTTGAGTCATTTGATGATCGAATACGAAAATGACTACATTT
GCTTTCTCCTACCTATGAATTT