JPsnpHou00386, JPsnpHou00386 (genetic_marker) Pyrus pyrifolia

Marker Overview


Name	JPsnpHou00386
dbSNP ID	N/A
Type	SNP
SNP Alleles	T/C
5' Flanking Sequence	GACGAAACAAAAGATGTGCTGGTGGAGTTCTATGCACCATGGTGTGGACATTGCAAATCC CTTGCTCCTACTTATGAGAAGGTTGCCTCAGCATTTAATTTGGAGGACGGTGTAGTGATT GCTAATCTTGATGCCGACAAATACAAGGATTTAGCTGAAAAGTATGGAGTTAGTGGATTT CCCACATTGAAATTTTTCCCAAAGAACAACAAGGAGGGTGAAGAGTATGGTGGCGGCAGA GATTTAGACGATTTTGTAAAGTTCATTAATGAAAAATCTGGCACCAGCAGAGACGGAAAA GGACAACTTACTTCCAAAGCTGGCGTTCTTGAAAATTTGGACGAATTAGTAAAGGAGTTT GTGAAATCTAGCAA
3' Flanking Sequence	GATGAGAAGAAGGCAATCTTTTCCAAGATAGAAGAGGAAGTTGGGAAACTTGAGGGTTCG GCTGCAAGATACGGTAAGATCTACTTGAAAGCTGCCAAGAACTCTTTGGAGAAAGGTCCT GATTATGCAAAGAATGAAATTCAGCGGCTTGGGCGCATACTCGAAAAGTCTGTCAACCCA ACTAAGGCCGACGAGTTCACTCTCAAGAAGAACATTCTATACACCTTCACTTCATCCTCA TGAGGAGGCACTTCCCACGGAGGGATGATTCTGTAACCTAGTTTCAGTGAAGTCGTCTCC CAAATTCTCCGGATCTTGGGAACCGACCGCGTTTTCAGTGTACTATCGATACACATCTTT TACTTTAAACATTTTTGCACTTTTAAGTTATCATTTGTAGTAGTGAAGGATAGCCGGCAT ACCATTAACAATAACCTAGTGTTTCTGTTTCGTCTTCAACGTTTATCTTAAAACCATTGT GGATCTTCCC
Species	Pyrus pyrifolia
Publication	[view all]
Contact	Toshiya Yamamoto
Comment	SNP position in sequence: 375

Contact

Name

Details

Toshiya Yamamoto

First name:	Toshiya
Last name:	Yamamoto
Institution:	National Institute of Fruit Tree Science, Graduate School of Life and Environmental Sciences, University of Tsukuba
Address:	National Institute of Fruit Tree Science, 2-1 Fujimoto, Tsukuba, Ibaraki 305-8605, Japan
Country:	Japan
Email:	toshiya@affrc.go.jp
Last update:	Apr 2014

Publications


Year	Publication
2014	Terakami S, Nishitani C, Kunihisa M, Shirasawa K, Sato S, Tabata S, Kurita K, Kanamori H, Katayose Y, Takada N, Saito T, Yamamoto T. Transcriptome-based single nucleotide polymorphism markers for genome mapping in Japanese pear (Pyrus pyrifolia Nakai). Tree genetics & genomes. 2014; 10(4):853-863.

Sequence

>JPsnpHou00386 ID=JPsnpHou00386; Name=JPsnpHou00386; organism=Pyrus pyrifolia; type=genetic_marker; length=865bp
GACGAAACAAAAGATGTGCTGGTGGAGTTCTATGCACCATGGTGTGGACA
TTGCAAATCCCTTGCTCCTACTTATGAGAAGGTTGCCTCAGCATTTAATT
TGGAGGACGGTGTAGTGATTGCTAATCTTGATGCCGACAAATACAAGGAT
TTAGCTGAAAAGTATGGAGTTAGTGGATTTCCCACATTGAAATTTTTCCC
AAAGAACAACAAGGAGGGTGAAGAGTATGGTGGCGGCAGAGATTTAGACG
ATTTTGTAAAGTTCATTAATGAAAAATCTGGCACCAGCAGAGACGGAAAA
GGACAACTTACTTCCAAAGCTGGCGTTCTTGAAAATTTGGACGAATTAGT
AAAGGAGTTTGTGAAATCTAGCAAyGATGAGAAGAAGGCAATCTTTTCCA
AGATAGAAGAGGAAGTTGGGAAACTTGAGGGTTCGGCTGCAAGATACGGT
AAGATCTACTTGAAAGCTGCCAAGAACTCTTTGGAGAAAGGTCCTGATTA
TGCAAAGAATGAAATTCAGCGGCTTGGGCGCATACTCGAAAAGTCTGTCA
ACCCAACTAAGGCCGACGAGTTCACTCTCAAGAAGAACATTCTATACACC
TTCACTTCATCCTCATGAGGAGGCACTTCCCACGGAGGGATGATTCTGTA
ACCTAGTTTCAGTGAAGTCGTCTCCCAAATTCTCCGGATCTTGGGAACCG
ACCGCGTTTTCAGTGTACTATCGATACACATCTTTTACTTTAAACATTTT
TGCACTTTTAAGTTATCATTTGTAGTAGTGAAGGATAGCCGGCATACCAT
TAACAATAACCTAGTGTTTCTGTTTCGTCTTCAACGTTTATCTTAAAACC
ATTGTGGATCTTCCC