JPsnpHou00396, JPsnpHou00396 (genetic_marker) Pyrus pyrifolia

Marker Overview


Name	JPsnpHou00396
dbSNP ID	N/A
Type	SNP
SNP Alleles	A/C
5' Flanking Sequence	CTGACCTTTGGGGAAGAGAACTCAACCTTTGTAGCTGATCCTGCTGAAGTGGAATTGGTT ACGTTTGATACTTGTCCAGGAATAGTGAAGAAGTACCAGCATCTTGAGGATTTTCATTGG GCAGTGAGGCCACTTCTGGTTGCATTGGGCATATTTACAGCCATGAAGCTAGGCATTTTT GTTGGAACAAAGGTGGGGAGGTCCAGGGTGAAGAAACAACAAAGCGGTGCTACACCGAAT GAGATTCAGCATACCGATGGTCAGAATTCTGGAAACCCGGCATGGATTCCTCCTAATATG AAAAATATCCTTTTCAGAGAAGGTGTTACCACCGGTCCTGCTCGGTAGTTTCATGCACAG TTCATCTGCCC
3' Flanking Sequence	GAACTAGTTTTAAGTTCAACCATGCATATATGCTGTAACTAGTTTGTTGGGTATCACTAG GGCATTTTACTCTTTAACTTAAGCTGGAGAACGGCGTTACAAACCGGACCACTGTCGAAT TTAGGGGCAAACATATTnGCTCTATATGTATATATAAATGTATATATTTTAATTGACTCA TTTGTGTTGATCATCTCTACCGTATTTTAATATTAACTTGGAAGCTTATATCCATATTTT TATGGAGAT
Species	Pyrus pyrifolia
Publication	[view all]
Contact	Toshiya Yamamoto
Comment	SNP position in sequence: 372

Contact

Name

Details

Toshiya Yamamoto

First name:	Toshiya
Last name:	Yamamoto
Institution:	National Institute of Fruit Tree Science, Graduate School of Life and Environmental Sciences, University of Tsukuba
Address:	National Institute of Fruit Tree Science, 2-1 Fujimoto, Tsukuba, Ibaraki 305-8605, Japan
Country:	Japan
Email:	toshiya@affrc.go.jp
Last update:	Apr 2014

Publications


Year	Publication
2014	Terakami S, Nishitani C, Kunihisa M, Shirasawa K, Sato S, Tabata S, Kurita K, Kanamori H, Katayose Y, Takada N, Saito T, Yamamoto T. Transcriptome-based single nucleotide polymorphism markers for genome mapping in Japanese pear (Pyrus pyrifolia Nakai). Tree genetics & genomes. 2014; 10(4):853-863.

Map Positions


#	Map Name	Linkage Group	Bin	Position	Locus	MapViewer
1	Pear-integrated_consensus_map-IPCG-2017	LG15	N/A	47.35	JPsnpHou00396	View

Sequence

>JPsnpHou00396 ID=JPsnpHou00396; Name=JPsnpHou00396; organism=Pyrus pyrifolia; type=genetic_marker; length=621bp
CTGACCTTTGGGGAAGAGAACTCAACCTTTGTAGCTGATCCTGCTGAAGT
GGAATTGGTTACGTTTGATACTTGTCCAGGAATAGTGAAGAAGTACCAGC
ATCTTGAGGATTTTCATTGGGCAGTGAGGCCACTTCTGGTTGCATTGGGC
ATATTTACAGCCATGAAGCTAGGCATTTTTGTTGGAACAAAGGTGGGGAG
GTCCAGGGTGAAGAAACAACAAAGCGGTGCTACACCGAATGAGATTCAGC
ATACCGATGGTCAGAATTCTGGAAACCCGGCATGGATTCCTCCTAATATG
AAAAATATCCTTTTCAGAGAAGGTGTTACCACCGGTCCTGCTCGGTAGTT
TCATGCACAGTTCATCTGCCCmGAACTAGTTTTAAGTTCAACCATGCATA
TATGCTGTAACTAGTTTGTTGGGTATCACTAGGGCATTTTACTCTTTAAC
TTAAGCTGGAGAACGGCGTTACAAACCGGACCACTGTCGAATTTAGGGGC
AAACATATTnGCTCTATATGTATATATAAATGTATATATTTTAATTGACT
CATTTGTGTTGATCATCTCTACCGTATTTTAATATTAACTTGGAAGCTTA
TATCCATATTTTTATGGAGAT