JPsnpHou00181, JPsnpHou00181 (genetic_marker) Pyrus pyrifolia

Marker Overview


Name	JPsnpHou00181
dbSNP ID	N/A
Type	SNP
SNP Alleles	A/G
5' Flanking Sequence	GGGAAATCGTGTATTTGGTGCGTTGAAGGGTGCTTTGGATGGAGGGTTGGATATCCCTCA CAGTGAAAAGAGGTTTGCTGGTTTCTCCAAGGATAGCAAGCAACTTGACCCAGAGGTTCA TCGGAAGTACATCTATGGTGGCCATGTTGCTGCCTACATTAGGACCTTGGCGGAGGATGA GCCAGAGAAGTATCAAAGTCACTTCAGTGAATATATTAAGAAGGGAATTGAAGCGGATAA CATCGAGGAGTTGTACAAGAAAGTTCATGCTGCCATCCGTGCTGATCCTACAATTAAGAA GACTGAAAAGCCTGCTCCTCAAGAACACAAGAGATACAACCTCAAAAAGCTCACCTTTGA TGAGAGGA
3' Flanking Sequence	GAAGAAGTTGGTTGAGAGATTGAnGGCCTTCAATGACGCTGGCAACGnTGACGACAGTGA TGATGATGATGATGAGTACTAAGCATTCAATCGGATATGTGGCCTAGTTTGTTTCCACCC TTAGGACATCTGTTGAATGAAAATCTATAAACTCTGTTATCTTTATAATTCAAACATTTG AATATGTGTCTCGTCAGGAGGTTCAAGTGAGAAGCGCTACTAAAGTTT
Species	Pyrus pyrifolia
Publication	[view all]
Contact	Toshiya Yamamoto
Comment	SNP position in sequence: 369

Contact

Name

Details

Toshiya Yamamoto

First name:	Toshiya
Last name:	Yamamoto
Institution:	National Institute of Fruit Tree Science, Graduate School of Life and Environmental Sciences, University of Tsukuba
Address:	National Institute of Fruit Tree Science, 2-1 Fujimoto, Tsukuba, Ibaraki 305-8605, Japan
Country:	Japan
Email:	toshiya@affrc.go.jp
Last update:	Apr 2014

Publications


Year	Publication
2014	Terakami S, Nishitani C, Kunihisa M, Shirasawa K, Sato S, Tabata S, Kurita K, Kanamori H, Katayose Y, Takada N, Saito T, Yamamoto T. Transcriptome-based single nucleotide polymorphism markers for genome mapping in Japanese pear (Pyrus pyrifolia Nakai). Tree genetics & genomes. 2014; 10(4):853-863.

Map Positions


#	Map Name	Linkage Group	Bin	Position	Locus	MapViewer
1	Pear-integrated_consensus_map-IPCG-2017	LG15	N/A	58.94	JPsnpHou00181	View

Sequence

>JPsnpHou00181 ID=JPsnpHou00181; Name=JPsnpHou00181; organism=Pyrus pyrifolia; type=genetic_marker; length=597bp
GGGAAATCGTGTATTTGGTGCGTTGAAGGGTGCTTTGGATGGAGGGTTGG
ATATCCCTCACAGTGAAAAGAGGTTTGCTGGTTTCTCCAAGGATAGCAAG
CAACTTGACCCAGAGGTTCATCGGAAGTACATCTATGGTGGCCATGTTGC
TGCCTACATTAGGACCTTGGCGGAGGATGAGCCAGAGAAGTATCAAAGTC
ACTTCAGTGAATATATTAAGAAGGGAATTGAAGCGGATAACATCGAGGAG
TTGTACAAGAAAGTTCATGCTGCCATCCGTGCTGATCCTACAATTAAGAA
GACTGAAAAGCCTGCTCCTCAAGAACACAAGAGATACAACCTCAAAAAGC
TCACCTTTGATGAGAGGArGAAGAAGTTGGTTGAGAGATTGAnGGCCTTC
AATGACGCTGGCAACGnTGACGACAGTGATGATGATGATGATGAGTACTA
AGCATTCAATCGGATATGTGGCCTAGTTTGTTTCCACCCTTAGGACATCT
GTTGAATGAAAATCTATAAACTCTGTTATCTTTATAATTCAAACATTTGA
ATATGTGTCTCGTCAGGAGGTTCAAGTGAGAAGCGCTACTAAAGTTT