JPsnpHou00631, JPsnpHou00631 (genetic_marker) Pyrus pyrifolia

Marker Overview


Name	JPsnpHou00631
dbSNP ID	N/A
Type	SNP
SNP Alleles	A/G
5' Flanking Sequence	TTCCTGACAGGTGGTGATGATCCTTATGATGATAATGTGGTGTTAACGAAGCTTTTTCTT CCTAATCTTAGACTTTTGGTAGTAACTGAAGGATCAGAGGGTTGCAGATATTACACACAG AAATTCCATGGCCGGGTTGGTGGTGTTAAAGTTAAACCTGTTGACACAACTGGTGCTGGT GATGCATTCGTTGGTGGGGTACTCAACAGCATAGCTTCTAACTTGAGTCTTTTTCAGGAC GAGAAGGGGTTGCGAGAAGCTCTACTCTTTGCGAATGCATGCGGTGCGCTCACAGTAACA GAAAGAGGAGCCATTCCTGCAATGCCGACAAGAGAAGCCGTGCTCCAGTGCTTAAAGCAG GCTGCTG
3' Flanking Sequence	TAAAAAGTAGACGGCAATGGTCGGAATCCATGTATCAATCTTAGTGTAATTTGAGTTTGT TTGCTGAGATATCATTGAGCTTTTTGCTCCTGGAGACCTCCGTATnAATTTTCGATTCGA CCCTACCCTTCGATTTAACTCGGAGGTACCTCTGGTACAGCGTACACTGGTGGTTACAAT GTAAACCACTGCCAATAAAAAATTTCAAGTCCAAAGTGTGAGCATCATAGCATTTCTGAA TGAACCTTCTGTGGCATACAATTTTTCTCCTCTTTTTTTTATGTATCGGGATGCCAGAAA TTACTTGCTCTTCGGTGCAAGGGTAAATGCTTTTAAACCTATAATAACTTTGCTACCAAA AAAAAAAAACAAAAACGAACGAC
Species	Pyrus pyrifolia
Publication	[view all]
Contact	Toshiya Yamamoto
Comment	SNP position in sequence: 368

Contact

Name

Details

Toshiya Yamamoto

First name:	Toshiya
Last name:	Yamamoto
Institution:	National Institute of Fruit Tree Science, Graduate School of Life and Environmental Sciences, University of Tsukuba
Address:	National Institute of Fruit Tree Science, 2-1 Fujimoto, Tsukuba, Ibaraki 305-8605, Japan
Country:	Japan
Email:	toshiya@affrc.go.jp
Last update:	Apr 2014

Publications


Year	Publication
2014	Terakami S, Nishitani C, Kunihisa M, Shirasawa K, Sato S, Tabata S, Kurita K, Kanamori H, Katayose Y, Takada N, Saito T, Yamamoto T. Transcriptome-based single nucleotide polymorphism markers for genome mapping in Japanese pear (Pyrus pyrifolia Nakai). Tree genetics & genomes. 2014; 10(4):853-863.

Map Positions


#	Map Name	Linkage Group	Bin	Position	Locus	MapViewer
1	Pear-integrated_consensus_map-IPCG-2017	LG7	N/A	77.86	JPsnpHou00631	View

Sequence

>JPsnpHou00631 ID=JPsnpHou00631; Name=JPsnpHou00631; organism=Pyrus pyrifolia; type=genetic_marker; length=751bp
TTCCTGACAGGTGGTGATGATCCTTATGATGATAATGTGGTGTTAACGAA
GCTTTTTCTTCCTAATCTTAGACTTTTGGTAGTAACTGAAGGATCAGAGG
GTTGCAGATATTACACACAGAAATTCCATGGCCGGGTTGGTGGTGTTAAA
GTTAAACCTGTTGACACAACTGGTGCTGGTGATGCATTCGTTGGTGGGGT
ACTCAACAGCATAGCTTCTAACTTGAGTCTTTTTCAGGACGAGAAGGGGT
TGCGAGAAGCTCTACTCTTTGCGAATGCATGCGGTGCGCTCACAGTAACA
GAAAGAGGAGCCATTCCTGCAATGCCGACAAGAGAAGCCGTGCTCCAGTG
CTTAAAGCAGGCTGCTGrTAAAAAGTAGACGGCAATGGTCGGAATCCATG
TATCAATCTTAGTGTAATTTGAGTTTGTTTGCTGAGATATCATTGAGCTT
TTTGCTCCTGGAGACCTCCGTATnAATTTTCGATTCGACCCTACCCTTCG
ATTTAACTCGGAGGTACCTCTGGTACAGCGTACACTGGTGGTTACAATGT
AAACCACTGCCAATAAAAAATTTCAAGTCCAAAGTGTGAGCATCATAGCA
TTTCTGAATGAACCTTCTGTGGCATACAATTTTTCTCCTCTTTTTTTTAT
GTATCGGGATGCCAGAAATTACTTGCTCTTCGGTGCAAGGGTAAATGCTT
TTAAACCTATAATAACTTTGCTACCAAAAAAAAAAAACAAAAACGAACGA
C