JPsnpHou00257, JPsnpHou00257 (genetic_marker) Pyrus pyrifolia

Marker Overview


Name	JPsnpHou00257
dbSNP ID	N/A
Type	SNP
SNP Alleles	T/C
5' Flanking Sequence	CAGCGGTTGATCTTTGCAGGTAAGCAGCTCGAGGATGGAAGGACACTTGCTGATTACAAC ATTCAAAAGGAGTCCACCCTGCACCTGGTACTTCGTCTGCGTGGTGGGATGCAGATCTTT GTGAAGACATTGACTGGGAAGACGATAACGTTGGAGGTAGAGAGTTCTGATACCATTGAT AATGTGAAGGCAAAGATCCAGGACAAGGAGGGCATTCCTCCGGACCAGCAGAGACTCATC TTTGCCGGTAAGCAGCTGGAGGACGGAAGGACTCTTGCGGATTACAACATCCAAAAGGAG TCTACCCTTCACCTTGTCCTTCGCCTCCGTGGGGGTTTCTGAATTCTGAATGATGCTTGT GATCT
3' Flanking Sequence	ATCCTGCACTGAACAGGGAATAGTTTAATTTTGGTTTTGGATTTTCGTACTCCAACTTTG ACCAATGGATGGGTCACCCTAATACTATGTAGTTAATGAATAAAGTAGTTTTATATGCAT CTGCAGGGTTTCCGGTTTCGTTTGCATTTGAAATTTCTATTTTACGCGCCCTTGTATTGC TCTTTGATCTTGTGTTTGGATGTTCGGGACTGAAGATGTCGATACCTCTTCCCTTTTCCT GCGCGACTGCAGATGGATTCATTTGGGATCTGCACAAGTTGTTTGCTAATATTCTTTCAT GTATCTGTTGTTCTACTTGGACCTTGGTGTTTGCCTGTACATTTCATTAAAAATAACCTG GTTTAGTAGATGAAAACGGAAAGGACTGTTTGGTATTCAAAAAAAAAAACAAAAAAAAAA AACTAAAGAGATAGCAACGACGACACAGGAGGTAGAG
Species	Pyrus pyrifolia
Publication	[view all]
Contact	Toshiya Yamamoto
Comment	SNP position in sequence: 366

Contact

Name

Details

Toshiya Yamamoto

First name:	Toshiya
Last name:	Yamamoto
Institution:	National Institute of Fruit Tree Science, Graduate School of Life and Environmental Sciences, University of Tsukuba
Address:	National Institute of Fruit Tree Science, 2-1 Fujimoto, Tsukuba, Ibaraki 305-8605, Japan
Country:	Japan
Email:	toshiya@affrc.go.jp
Last update:	Apr 2014

Publications


Year	Publication
2014	Terakami S, Nishitani C, Kunihisa M, Shirasawa K, Sato S, Tabata S, Kurita K, Kanamori H, Katayose Y, Takada N, Saito T, Yamamoto T. Transcriptome-based single nucleotide polymorphism markers for genome mapping in Japanese pear (Pyrus pyrifolia Nakai). Tree genetics & genomes. 2014; 10(4):853-863.

Map Positions


#	Map Name	Linkage Group	Bin	Position	Locus	MapViewer
1	Pear-integrated_consensus_map-IPCG-2017	LG11	N/A	138.91	JPsnpHou00257	View

Sequence

>JPsnpHou00257 ID=JPsnpHou00257; Name=JPsnpHou00257; organism=Pyrus pyrifolia; type=genetic_marker; length=823bp
CAGCGGTTGATCTTTGCAGGTAAGCAGCTCGAGGATGGAAGGACACTTGC
TGATTACAACATTCAAAAGGAGTCCACCCTGCACCTGGTACTTCGTCTGC
GTGGTGGGATGCAGATCTTTGTGAAGACATTGACTGGGAAGACGATAACG
TTGGAGGTAGAGAGTTCTGATACCATTGATAATGTGAAGGCAAAGATCCA
GGACAAGGAGGGCATTCCTCCGGACCAGCAGAGACTCATCTTTGCCGGTA
AGCAGCTGGAGGACGGAAGGACTCTTGCGGATTACAACATCCAAAAGGAG
TCTACCCTTCACCTTGTCCTTCGCCTCCGTGGGGGTTTCTGAATTCTGAA
TGATGCTTGTGATCTyATCCTGCACTGAACAGGGAATAGTTTAATTTTGG
TTTTGGATTTTCGTACTCCAACTTTGACCAATGGATGGGTCACCCTAATA
CTATGTAGTTAATGAATAAAGTAGTTTTATATGCATCTGCAGGGTTTCCG
GTTTCGTTTGCATTTGAAATTTCTATTTTACGCGCCCTTGTATTGCTCTT
TGATCTTGTGTTTGGATGTTCGGGACTGAAGATGTCGATACCTCTTCCCT
TTTCCTGCGCGACTGCAGATGGATTCATTTGGGATCTGCACAAGTTGTTT
GCTAATATTCTTTCATGTATCTGTTGTTCTACTTGGACCTTGGTGTTTGC
CTGTACATTTCATTAAAAATAACCTGGTTTAGTAGATGAAAACGGAAAGG
ACTGTTTGGTATTCAAAAAAAAAAACAAAAAAAAAAAACTAAAGAGATAG
CAACGACGACACAGGAGGTAGAG