JPsnpHou00231, JPsnpHou00231 (genetic_marker) Pyrus pyrifolia

Marker Overview


Name	JPsnpHou00231
dbSNP ID	N/A
Type	SNP
SNP Alleles	C/G
5' Flanking Sequence	GAAGAATCACGTTTCCAAATATTTAAATCCTGCTTGAGAAAATCACCTGTTTCAAAGGAT GTTGATCTGAGAGCACTGGCTAGATATACACAGGGCTTTAGTGGGGCCGATATCACAGAG ATCTGCCAGCGGTCATGCAAGTATGCCATAAGAGAAGAATAATAAGAAAAGGATATTGAG CGGGAGAGAAGGAGAGCAGAGAATCCAGATTCTATGGATGAGGACATTGACGATGAAGTG GCGGAGATTAAAGCTGCTCATTTTGAGGAGTCGATGAAATATGCTCGTAGGAGTGTCAGC GATGCTGATATACGCAAATACCAGGTCTTTGCTCAGACCTTGCAGCAGTCCAGGGGTTTC GGAA
3' Flanking Sequence	TGAGTTTAAGTTTACTGAAAATCCACAAACTGGGACGACCGGCTCTGATGCATTTGCAAC TTCTnCTGCTGCTGCAGATGAAGATGATTTGTATAGTTAATATTATCATGTGCATGGTTC CGGAGGCAGTTCCGTCCGCGGATACGCCTTTTGTAGGCTCATGTTATCCACCTTTGTGGA AGGCTTTCCTTTTCATGGTTATGACTCTCAAGTCTTTTGTGTACTAAAGAGTTTGTGGGG TTTGTAGGATAACATGATGnTTTTAAGTATATTATGCTGTTAATCTTATTTGTATCAATC AACTGATGGATTGGAAAAGGCCAGTTACTTTGTTAATGAGATTTGTTCTnCTTTTAAAAA T
Species	Pyrus pyrifolia
Publication	[view all]
Contact	Toshiya Yamamoto
Comment	SNP position in sequence: 365

Contact

Name

Details

Toshiya Yamamoto

First name:	Toshiya
Last name:	Yamamoto
Institution:	National Institute of Fruit Tree Science, Graduate School of Life and Environmental Sciences, University of Tsukuba
Address:	National Institute of Fruit Tree Science, 2-1 Fujimoto, Tsukuba, Ibaraki 305-8605, Japan
Country:	Japan
Email:	toshiya@affrc.go.jp
Last update:	Apr 2014

Publications


Year	Publication
2014	Terakami S, Nishitani C, Kunihisa M, Shirasawa K, Sato S, Tabata S, Kurita K, Kanamori H, Katayose Y, Takada N, Saito T, Yamamoto T. Transcriptome-based single nucleotide polymorphism markers for genome mapping in Japanese pear (Pyrus pyrifolia Nakai). Tree genetics & genomes. 2014; 10(4):853-863.

Map Positions


#	Map Name	Linkage Group	Bin	Position	Locus	MapViewer
1	Pear-integrated_consensus_map-IPCG-2017	LG3	N/A	132.35	JPsnpHou00231	View

Sequence

>JPsnpHou00231 ID=JPsnpHou00231; Name=JPsnpHou00231; organism=Pyrus pyrifolia; type=genetic_marker; length=726bp
GAAGAATCACGTTTCCAAATATTTAAATCCTGCTTGAGAAAATCACCTGT
TTCAAAGGATGTTGATCTGAGAGCACTGGCTAGATATACACAGGGCTTTA
GTGGGGCCGATATCACAGAGATCTGCCAGCGGTCATGCAAGTATGCCATA
AGAGAAGAATAATAAGAAAAGGATATTGAGCGGGAGAGAAGGAGAGCAGA
GAATCCAGATTCTATGGATGAGGACATTGACGATGAAGTGGCGGAGATTA
AAGCTGCTCATTTTGAGGAGTCGATGAAATATGCTCGTAGGAGTGTCAGC
GATGCTGATATACGCAAATACCAGGTCTTTGCTCAGACCTTGCAGCAGTC
CAGGGGTTTCGGAAsTGAGTTTAAGTTTACTGAAAATCCACAAACTGGGA
CGACCGGCTCTGATGCATTTGCAACTTCTnCTGCTGCTGCAGATGAAGAT
GATTTGTATAGTTAATATTATCATGTGCATGGTTCCGGAGGCAGTTCCGT
CCGCGGATACGCCTTTTGTAGGCTCATGTTATCCACCTTTGTGGAAGGCT
TTCCTTTTCATGGTTATGACTCTCAAGTCTTTTGTGTACTAAAGAGTTTG
TGGGGTTTGTAGGATAACATGATGnTTTTAAGTATATTATGCTGTTAATC
TTATTTGTATCAATCAACTGATGGATTGGAAAAGGCCAGTTACTTTGTTA
ATGAGATTTGTTCTnCTTTTAAAAAT