JPsnpHou00103, JPsnpHou00103 (genetic_marker) Pyrus pyrifolia

Marker Overview


Name	JPsnpHou00103
dbSNP ID	N/A
Type	SNP
SNP Alleles	A/T
5' Flanking Sequence	GGTTGCTGAATTTCTCCAGAAACATGACCTAGATCTTATTTGCCGTGCTCATCAGGTTGT GGAAGATGGATATGAGTTTTTTGGAAAAAGGAAGCTGGTAACCATATTTTCAGCCCCAAA TTACTGTGGGGAGTTTGATAATGCTGGTGCCATGATGAGTGTAGATGATACATTGACATG TTCCTTCCAGATTTTGAAAGCCTCTGAGAAGAAGGGAAAGCTTGGGATAAACATGTTAAG ACCAGGAACTCCTCCTCACAAGGGTAAGGGATGAACGATTGCAGAAGCTTTACTTGTAAC TTCTGAGAACTCCTTCTGGATCATCCTGTGCTGTTTGGCTTTCTCTCGACTGCAAGGTTT AATT
3' Flanking Sequence	TTCACCTCTGCCTTCTTTTGTGCCGTACGGAAGTACGAAGCTGAAAATTCACTTCTACAG TGGCAAAAGAACCATTAGTGTATCTGAATTAGTGCTAACTTTTTTTTTCCCAAAAAAAAA AAAGAAGTGAAACCGTCTGTATAATTGAAATTTCGGCTCCATTGTGTTGAATTGTAGAAG TTATTGTTTCATGGCAAAACCTAAATTTTCTGTTGC
Species	Pyrus pyrifolia
Publication	[view all]
Contact	Toshiya Yamamoto
Comment	SNP position in sequence: 365

Contact

Name

Details

Toshiya Yamamoto

First name:	Toshiya
Last name:	Yamamoto
Institution:	National Institute of Fruit Tree Science, Graduate School of Life and Environmental Sciences, University of Tsukuba
Address:	National Institute of Fruit Tree Science, 2-1 Fujimoto, Tsukuba, Ibaraki 305-8605, Japan
Country:	Japan
Email:	toshiya@affrc.go.jp
Last update:	Apr 2014

Publications


Year	Publication
2014	Terakami S, Nishitani C, Kunihisa M, Shirasawa K, Sato S, Tabata S, Kurita K, Kanamori H, Katayose Y, Takada N, Saito T, Yamamoto T. Transcriptome-based single nucleotide polymorphism markers for genome mapping in Japanese pear (Pyrus pyrifolia Nakai). Tree genetics & genomes. 2014; 10(4):853-863.

Map Positions


#	Map Name	Linkage Group	Bin	Position	Locus	MapViewer
1	Pear-integrated_consensus_map-IPCG-2017	LG14	N/A	103.1	JPsnpHou00103	View

Sequence

>JPsnpHou00103 ID=JPsnpHou00103; Name=JPsnpHou00103; organism=Pyrus pyrifolia; type=genetic_marker; length=581bp
GGTTGCTGAATTTCTCCAGAAACATGACCTAGATCTTATTTGCCGTGCTC
ATCAGGTTGTGGAAGATGGATATGAGTTTTTTGGAAAAAGGAAGCTGGTA
ACCATATTTTCAGCCCCAAATTACTGTGGGGAGTTTGATAATGCTGGTGC
CATGATGAGTGTAGATGATACATTGACATGTTCCTTCCAGATTTTGAAAG
CCTCTGAGAAGAAGGGAAAGCTTGGGATAAACATGTTAAGACCAGGAACT
CCTCCTCACAAGGGTAAGGGATGAACGATTGCAGAAGCTTTACTTGTAAC
TTCTGAGAACTCCTTCTGGATCATCCTGTGCTGTTTGGCTTTCTCTCGAC
TGCAAGGTTTAATTwTTCACCTCTGCCTTCTTTTGTGCCGTACGGAAGTA
CGAAGCTGAAAATTCACTTCTACAGTGGCAAAAGAACCATTAGTGTATCT
GAATTAGTGCTAACTTTTTTTTTCCCAAAAAAAAAAAAGAAGTGAAACCG
TCTGTATAATTGAAATTTCGGCTCCATTGTGTTGAATTGTAGAAGTTATT
GTTTCATGGCAAAACCTAAATTTTCTGTTGC