JPsnpHou00308, JPsnpHou00308 (genetic_marker) Pyrus pyrifolia

Marker Overview


Name	JPsnpHou00308
dbSNP ID	N/A
Type	SNP
SNP Alleles	C/G
5' Flanking Sequence	GAACAAGCTGACGAAGTCTGCTTCTTTTGGGTTCCGAAGCAACAATGCCGGACCACCTGG CTTTAAGACTCCGGCGGTTGAGGAGCCGGATGTCTCATGGGTCAATACCCTAGTTAGGGA TGTTTCTTCCGAGAGGTCTGAGCTGTTTGGTGCAGACAAGAAGCAAAGGTATCATCACCT CAACAATGGGGGTCACGAAATGCTTCCCTCGTGGGCGGAGCTGATGTACATAGAACAGGA GCAGAGGGCGTAAGCAACGGTCCTGTGCTCCCAGCATCCGCTGAAGAAATCGACACGTCG AAGTATTTTATTAGTCTTTCGATAAATTTATAGTTACTTGTAATCTAAGAAAACGGGAAA GGT
3' Flanking Sequence	ACAGCAAACCAATTCCATTCAATCAAGGCCCTCAAATTCTGGGCAGGAGAAAGGAGACCA AGTTAGGCTCTAGAATTTGGAGAAATTAGATAGGAGGCGAATATGCTCTGCTTTATTTTT TCATTGTATTATTGTATTTATTTATTTATTTTCCCTCTCCATCTGGGAGATGCTAATTTC TAGTTCCCCnCAGAGATGATAAATGCATCAGTGGCAGAAATGTATTTTTATTCAGTCTGA TCAAATCTTGCTACTCATTTTGGAAAGTAAAGCGT
Species	Pyrus pyrifolia
Publication	[view all]
Contact	Toshiya Yamamoto
Comment	SNP position in sequence: 364

Contact

Name

Details

Toshiya Yamamoto

First name:	Toshiya
Last name:	Yamamoto
Institution:	National Institute of Fruit Tree Science, Graduate School of Life and Environmental Sciences, University of Tsukuba
Address:	National Institute of Fruit Tree Science, 2-1 Fujimoto, Tsukuba, Ibaraki 305-8605, Japan
Country:	Japan
Email:	toshiya@affrc.go.jp
Last update:	Apr 2014

Publications


Year	Publication
2014	Terakami S, Nishitani C, Kunihisa M, Shirasawa K, Sato S, Tabata S, Kurita K, Kanamori H, Katayose Y, Takada N, Saito T, Yamamoto T. Transcriptome-based single nucleotide polymorphism markers for genome mapping in Japanese pear (Pyrus pyrifolia Nakai). Tree genetics & genomes. 2014; 10(4):853-863.

Map Positions


#	Map Name	Linkage Group	Bin	Position	Locus	MapViewer
1	Pear-integrated_consensus_map-IPCG-2017	LG1	N/A	103.46	JPsnpHou00308	View

Sequence

>JPsnpHou00308 ID=JPsnpHou00308; Name=JPsnpHou00308; organism=Pyrus pyrifolia; type=genetic_marker; length=639bp
GAACAAGCTGACGAAGTCTGCTTCTTTTGGGTTCCGAAGCAACAATGCCG
GACCACCTGGCTTTAAGACTCCGGCGGTTGAGGAGCCGGATGTCTCATGG
GTCAATACCCTAGTTAGGGATGTTTCTTCCGAGAGGTCTGAGCTGTTTGG
TGCAGACAAGAAGCAAAGGTATCATCACCTCAACAATGGGGGTCACGAAA
TGCTTCCCTCGTGGGCGGAGCTGATGTACATAGAACAGGAGCAGAGGGCG
TAAGCAACGGTCCTGTGCTCCCAGCATCCGCTGAAGAAATCGACACGTCG
AAGTATTTTATTAGTCTTTCGATAAATTTATAGTTACTTGTAATCTAAGA
AAACGGGAAAGGTsACAGCAAACCAATTCCATTCAATCAAGGCCCTCAAA
TTCTGGGCAGGAGAAAGGAGACCAAGTTAGGCTCTAGAATTTGGAGAAAT
TAGATAGGAGGCGAATATGCTCTGCTTTATTTTTTCATTGTATTATTGTA
TTTATTTATTTATTTTCCCTCTCCATCTGGGAGATGCTAATTTCTAGTTC
CCCnCAGAGATGATAAATGCATCAGTGGCAGAAATGTATTTTTATTCAGT
CTGATCAAATCTTGCTACTCATTTTGGAAAGTAAAGCGT