JPsnpHou00496, JPsnpHou00496 (genetic_marker) Pyrus pyrifolia

Marker Overview


Name	JPsnpHou00496
dbSNP ID	N/A
Type	SNP
SNP Alleles	A/G
5' Flanking Sequence	CTGTTGCAGAAGGTGCCAAAACAGCTGGTGCATCGCGAATCATTGGCATTGATATTGACA GCAAAAAGTTTGATACAGCAAAGAAATTTGGAGTTACTGAATTTGTGAATCCAAAGGATC ACGAGAAGCCAATCCAACAAGTCCTTGTTGATCTCACTGATGGTGGTGTTGACTACAGTT TTGAGTGCATTGGAAATGTCTCCGTGATGAGGGCTGCCTTGGAGTGCTGCCACAAGGGCT GGGGGACATCTGTTATTGTTGGTGTTGCGGCATCAGGGCAGGAGATCTCTACTCGTCCTT TTCAGTTGGTAACTGGTCGTGTCTGGAAAGGAACAGCCTTTGGTGGTTTCAAGAGTCGCT C
3' Flanking Sequence	CAGGTGCCATGGCTTGTAGAAAAGTACTTGAAGAAGGAAATCAAAGTTGATGAATACATC ACCCACACTTTGACTCTTGGTGAGATCAACAAAGCATTTGATCTGATGCACGAAGGGGGA TGCCTCCGGTGTGTGCTTTCTACCGATGCATGAAGTGGGATGCCTCCGGTCTGCCCTTGC TTCGGATTCACGAGAATTCCATGTAGGCTCATTCCTAGTTTCTCATGTGATGGAACTTTC TCCTTATCCTTATCCCCTTTTAGTGGTAAGATTTCAAAAATAAACTTGACAGTCCCTAGC TTTGTTTATAAATAAACTTCTGGCTGGTTTGCTACTTGTTATA
Species	Pyrus pyrifolia
Publication	[view all]
Contact	Toshiya Yamamoto
Comment	SNP position in sequence: 362

Contact

Name

Details

Toshiya Yamamoto

First name:	Toshiya
Last name:	Yamamoto
Institution:	National Institute of Fruit Tree Science, Graduate School of Life and Environmental Sciences, University of Tsukuba
Address:	National Institute of Fruit Tree Science, 2-1 Fujimoto, Tsukuba, Ibaraki 305-8605, Japan
Country:	Japan
Email:	toshiya@affrc.go.jp
Last update:	Apr 2014

Publications


Year	Publication
2014	Terakami S, Nishitani C, Kunihisa M, Shirasawa K, Sato S, Tabata S, Kurita K, Kanamori H, Katayose Y, Takada N, Saito T, Yamamoto T. Transcriptome-based single nucleotide polymorphism markers for genome mapping in Japanese pear (Pyrus pyrifolia Nakai). Tree genetics & genomes. 2014; 10(4):853-863.

Map Positions


#	Map Name	Linkage Group	Bin	Position	Locus	MapViewer
1	Pear-integrated_consensus_map-IPCG-2017	LG10	N/A	125.41	JPsnpHou00496	View

Sequence

>JPsnpHou00496 ID=JPsnpHou00496; Name=JPsnpHou00496; organism=Pyrus pyrifolia; type=genetic_marker; length=705bp
CTGTTGCAGAAGGTGCCAAAACAGCTGGTGCATCGCGAATCATTGGCATT
GATATTGACAGCAAAAAGTTTGATACAGCAAAGAAATTTGGAGTTACTGA
ATTTGTGAATCCAAAGGATCACGAGAAGCCAATCCAACAAGTCCTTGTTG
ATCTCACTGATGGTGGTGTTGACTACAGTTTTGAGTGCATTGGAAATGTC
TCCGTGATGAGGGCTGCCTTGGAGTGCTGCCACAAGGGCTGGGGGACATC
TGTTATTGTTGGTGTTGCGGCATCAGGGCAGGAGATCTCTACTCGTCCTT
TTCAGTTGGTAACTGGTCGTGTCTGGAAAGGAACAGCCTTTGGTGGTTTC
AAGAGTCGCTCrCAGGTGCCATGGCTTGTAGAAAAGTACTTGAAGAAGGA
AATCAAAGTTGATGAATACATCACCCACACTTTGACTCTTGGTGAGATCA
ACAAAGCATTTGATCTGATGCACGAAGGGGGATGCCTCCGGTGTGTGCTT
TCTACCGATGCATGAAGTGGGATGCCTCCGGTCTGCCCTTGCTTCGGATT
CACGAGAATTCCATGTAGGCTCATTCCTAGTTTCTCATGTGATGGAACTT
TCTCCTTATCCTTATCCCCTTTTAGTGGTAAGATTTCAAAAATAAACTTG
ACAGTCCCTAGCTTTGTTTATAAATAAACTTCTGGCTGGTTTGCTACTTG
TTATA