JPsnpHou00446, JPsnpHou00446 (genetic_marker) Pyrus pyrifolia

Marker Overview


Name	JPsnpHou00446
dbSNP ID	N/A
Type	SNP
SNP Alleles	A/G
5' Flanking Sequence	CTATTTTGGTTGATGCTGTACGAATGGTGAATCAATTACGTGGTGAAGCCCAAAAGTTGA AGGACACAAATTCAGGCCTCCAGGAGAAGATCAAGGAATTGAAGGCAGAGAAGAATGAAC TTCGCGATGAGAAACTGAGGCTGAAATTGGAGAAAGAGAAGTTGGAACAGCAACTTAAAT CCATGAATGTCCAGCCCGGCTTTTTACCTCCCCCTCCTGCAATTCCTGCTGCATTTACTG CTCAAGGCCAAGCTCGCGGAAACAAGATGGTGCCTTTCATTGGCTACCCTGGGGTTGCCA TGTGGCAGTTCATGCCACCTGCCGCGGTGGATACTTCGCAGGATCATGTACTCCGCCCAC C
3' Flanking Sequence	GTTGCTTAAGTCGGTAACGTCTAAAATTGATTGGGGTGATTTGGGATAACATTGTCCCAA ACTAGTGTATTATCATGTCATTGGTCGTGTACTTTTGTTTAACTGTCTACTAACTGAATT TGGTGGGTGACTTGACTGTATTTGCAACTGCAATTGCAAAACGAAACCTGGGTACTTTTT ATGTATTATGCTGGTAATATTTACATGTAAATCGTATGAACTAATAAGTTATTCTGGCAA CTTCTCGTTACCAATTTTTAGGTAAAAAAGAAAAAAACCGAAAAACG
Species	Pyrus pyrifolia
Publication	[view all]
Contact	Toshiya Yamamoto
Comment	SNP position in sequence: 362

Contact

Name

Details

Toshiya Yamamoto

First name:	Toshiya
Last name:	Yamamoto
Institution:	National Institute of Fruit Tree Science, Graduate School of Life and Environmental Sciences, University of Tsukuba
Address:	National Institute of Fruit Tree Science, 2-1 Fujimoto, Tsukuba, Ibaraki 305-8605, Japan
Country:	Japan
Email:	toshiya@affrc.go.jp
Last update:	Apr 2014

Publications


Year	Publication
2014	Terakami S, Nishitani C, Kunihisa M, Shirasawa K, Sato S, Tabata S, Kurita K, Kanamori H, Katayose Y, Takada N, Saito T, Yamamoto T. Transcriptome-based single nucleotide polymorphism markers for genome mapping in Japanese pear (Pyrus pyrifolia Nakai). Tree genetics & genomes. 2014; 10(4):853-863.

Map Positions


#	Map Name	Linkage Group	Bin	Position	Locus	MapViewer
1	Pear-integrated_consensus_map-IPCG-2017	LG11	N/A	137.64	JPsnpHou00446	View

Sequence

>JPsnpHou00446 ID=JPsnpHou00446; Name=JPsnpHou00446; organism=Pyrus pyrifolia; type=genetic_marker; length=649bp
CTATTTTGGTTGATGCTGTACGAATGGTGAATCAATTACGTGGTGAAGCC
CAAAAGTTGAAGGACACAAATTCAGGCCTCCAGGAGAAGATCAAGGAATT
GAAGGCAGAGAAGAATGAACTTCGCGATGAGAAACTGAGGCTGAAATTGG
AGAAAGAGAAGTTGGAACAGCAACTTAAATCCATGAATGTCCAGCCCGGC
TTTTTACCTCCCCCTCCTGCAATTCCTGCTGCATTTACTGCTCAAGGCCA
AGCTCGCGGAAACAAGATGGTGCCTTTCATTGGCTACCCTGGGGTTGCCA
TGTGGCAGTTCATGCCACCTGCCGCGGTGGATACTTCGCAGGATCATGTA
CTCCGCCCACCrGTTGCTTAAGTCGGTAACGTCTAAAATTGATTGGGGTG
ATTTGGGATAACATTGTCCCAAACTAGTGTATTATCATGTCATTGGTCGT
GTACTTTTGTTTAACTGTCTACTAACTGAATTTGGTGGGTGACTTGACTG
TATTTGCAACTGCAATTGCAAAACGAAACCTGGGTACTTTTTATGTATTA
TGCTGGTAATATTTACATGTAAATCGTATGAACTAATAAGTTATTCTGGC
AACTTCTCGTTACCAATTTTTAGGTAAAAAAGAAAAAAACCGAAAAACG